Fuzzy tissue detection for real-time focal control in corneal confocal microscopy. - Andreas Bartschat; Stephan Allgeier; Tim Scherr; Johannes Stegmaier; Sebastian Bohn; Klaus-Martin Reichert; Arjan Kuijper; Markus Reischl; Oliver Stachs; Bernd Köhler; Ralf Mikut (Autom., 2019)

BeadNet: deep learning-based bead detection and counting in low-resolution microscopy images. - Tim Scherr; Karolin Streule; Andreas Bartschat; Moritz Böhland; Johannes Stegmaier; Markus Reischl; Véronique Orian-Rousseau; Ralf Mikut (Bioinform., 2020)

Cell Segmentation and Tracking using Distance Transform Predictions and Movement Estimation with Graph-Based Matching. - Tim Scherr; Katharina Löffler; Moritz Böhland; Ralf Mikut (CoRR, 2020)

Automated Annotator Variability Inspection for Biomedical Image Segmentation. - Marcel P. Schilling; Tim Scherr; Friedrich R. Münke; Oliver Neumann; Mark Schutera; Ralf Mikut; Markus Reischl (IEEE Access, 2022)

ciscNet - A Single-Branch Cell Instance Segmentation and Classification Network. - Moritz Böhland; Oliver Neumann; Marcel P. Schilling; Markus Reischl; Ralf Mikut; Katharina Löffler; Tim Scherr (CoRR, 2022)

CoNIC Challenge: Pushing the Frontiers of Nuclear Detection, Segmentation, Classification and Counting. - Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Martin Weigert 001; Uwe Schmidt; Wenhua Zhang; Jun Zhang 018; Sen Yang 006; Jinxi Xiang; Xiyue Wang; Josef Lorenz Rumberger; Elias Baumann; et al. (CoRR, 2023)

Deep Learning-Based Particle Detection and Instance Segmentation for Microscopy Images. - Tim Scherr (2023)

ObiWan-Microbi: OMERO-based integrated workflow for annotating microbes in the cloud. - Johannes Seiffarth; Tim Scherr; Bastian Wollenhaupt; Oliver Neumann; Hanno Scharr; Dietrich Kohlheyer; Ralf Mikut; Katharina Nöh (SoftwareX, 2024)

CoNIC Challenge: Pushing the frontiers of nuclear detection, segmentation, classification and counting. - Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Martin Weigert 001; Uwe Schmidt; Wenhua Zhang; Jun Zhang 018; Sen Yang 006; Jinxi Xiang; Xiyue Wang; Josef Lorenz Rumberger; Elias Baumann; et al. (Medical Image Anal., 2024)