MAGenTA: a Galaxy implemented tool for complete Tn-Seq analysis and data visualization. - Katherine Maia McCoy; Margaret L. Antonio; Tim van Opijnen (Bioinform., 2017)

Exact inference under the perfect phylogeny model. - Surjyendu Ray; Bei Jia; Sam Safavi; Tim van Opijnen; Ralph Isberg; Jason Rosch; José Bento 001 (CoRR, 2019)

ShinyOmics: collaborative exploration of omics-data. - Defne Surujon; Tim van Opijnen (BMC Bioinform., 2020)