A benchmark server using high resolution protein structure data, and benchmark results for membrane helix predictions. - Emma M. Rath; Dominique Tessier; Alexander A. Campbell; Hong Ching Lee; Tim Werner; Noeris K. Salam; Lawrence K. Lee; W. Bret Church (BMC Bioinform., 2013)

Kink Characterization and Modeling in Transmembrane Protein Structures. - Tim Werner; W. Bret Church (J. Chem. Inf. Model., 2013)

A fast, GPU-based geometrical placement planner for unknown sensor-modelled objects and placement areas. - Johannes Baumgartl; Tim Werner; Per Kaminsky; Dominik Henrich (ICRA, 2014)

RBO Aleph: leveraging novel information sources for protein structure prediction. - Mahmoud Mabrouk; Ines Putz; Tim Werner; Michael Schneider; Moritz Neeb; Philipp Bartels; Oliver Brock (Nucleic Acids Res., 2015)

Influence of Locality on the Scalability of Method-and System-Parallel Explicit Peer Methods. - Matthias Korch; Thomas Rauber; Matthias Stachowski; Tim Werner (FedCSIS, 2016)

Exploiting Limited Access Distance for Kernel Fusion Across the Stages of Explicit One-Step Methods on GPUs. - Matthias Korch; Tim Werner (SBAC-PAD, 2018)

Accelerating explicit ODE methods on GPUs by kernel fusion. - Matthias Korch; Tim Werner (Concurr. Comput. Pract. Exp., 2018)

Multi-workgroup Tiling to Improve the Locality of Explicit One-Step Methods for ODE Systems with Limited Access Distance on GPUs. - Matthias Korch; Tim Werner (PPAM (1), 2019)

Implementation and Optimization of a 1D2V PIC Method for Nonlinear Kinetic Models on GPUs. - Matthias Korch; Philipp Raithel; Tim Werner (PDP, 2020)

Improving locality of explicit one-step methods on GPUs by tiling across stages and time steps. - Matthias Korch; Tim Werner (Future Gener. Comput. Syst., 2020)

Generative Machine Learning for Resource-Aware 5G and IoT Systems. - Nico Piatkowski; Johannes Sebastian Mueller-Roemer; Peter Hasse; Adam Bachorek; Tim Werner; Pascal Birnstill; Andreas Morgenstern; Lutz Stobbe (ICC Workshops, 2021)

An in-depth introduction of multi-workgroup tiling for improving the locality of explicit one-step methods for ODE systems with limited access distance on GPUs. - Matthias Korch; Tim Werner (Concurr. Comput. Pract. Exp., 2021)

Punctuality Predictions in Public Transportation: Quantifying the Effect of External Factors. - Tim Meyer-Hollatz; Nina Schwarz; Tim Werner (Wirtschaftsinformatik, 2023)

Automatische Generierung von effizienten, parallelen Implementierungsvarianten für ODE-Verfahren aus deren Datenflussgraphen mit Kernelfusion und Tiling für GPUs und CPUs. - Tim Werner (2023)