A Practical Solution for Aligning and Simplifying Pairs of Protein Backbones under the Discrete Fréchet Distance. - Tim Wylie; Jun Luo 008; Binhai Zhu (ICCSA (3), 2011)

Spatio-temporal Co-occurrence Pattern Mining in Data Sets with Evolving Regions. - Karthik Ganesan Pillai; Rafal A. Angryk; Juan M. Banda; Michael A. Schuh; Tim Wylie (ICDM Workshops, 2012)

A Polynomial Time Solution for Protein Chain Pair Simplification under the Discrete Fréchet Distance. - Tim Wylie; Binhai Zhu (ISBRA, 2012)

When Too Similar Is Bad: A Practical Example of the Solar Dynamics Observatory Content-Based Image-Retrieval System. - Juan M. Banda; Michael A. Schuh; Tim Wylie; Patrick McInerney; Rafal A. Angryk (ADBIS (2), 2013)

Spatiotemporal Co-occurrence Rules. - Karthik Ganesan Pillai; Rafal A. Angryk; Juan M. Banda; Tim Wylie; Michael A. Schuh (ADBIS (2), 2013)

Improving the Performance of High-Dimensional kNN Retrieval through Localized Dataspace Segmentation and Hybrid Indexing. - Michael A. Schuh; Tim Wylie; Rafal A. Angryk (ADBIS, 2013)

A Comprehensive Study of iDistance Partitioning Strategies for kNN Queries and High-Dimensional Data Indexing. - Michael A. Schuh; Tim Wylie; Juan M. Banda; Rafal A. Angryk (BNCOD, 2013)

Discretely Following a Curve. - Tim Wylie (COCOA, 2013)

Cluster Analysis for Optimal Indexing. - Tim Wylie; Michael A. Schuh; John W. Sheppard; Rafal A. Angryk (FLAIRS, 2013)

Protein Chain Pair Simplification under the Discrete Fréchet Distance. - Tim Wylie; Binhai Zhu (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Approximating High-Dimensional Range Queries with kNN Indexing Techniques. - Michael A. Schuh; Tim Wylie; Chang Liu 080; Rafal A. Angryk (COCOON, 2014)

Mitigating the Curse of Dimensionality for Exact kNN Retrieval. - Michael A. Schuh; Tim Wylie; Rafal A. Angryk (FLAIRS, 2014)

On the Chain Pair Simplification Problem. - Omrit Filtser; Matthew J. Katz; Tim Wylie; Binhai Zhu (CoRR, 2014)

Intermittent Map Matching with the Discrete Fréchet Distance. - Tim Wylie; Binhai Zhu (CoRR, 2014)

Following a curve with the discrete Fréchet distance. - Tim Wylie; Binhai Zhu (Theor. Comput. Sci., 2014)

Flipping Tiles: Concentration Independent Coin Flips in Tile Self-Assembly. - Cameron T. Chalk; Bin Fu; Alejandro Huerta; Mario A. Maldonado; Eric Martinez; Robert T. Schweller; Tim Wylie (DNA, 2015)

On the Chain Pair Simplification Problem. - Chenglin Fan; Omrit Filtser; Matthew J. Katz; Tim Wylie; Binhai Zhu (WADS, 2015)

On visualization techniques for solar data mining. - Michael A. Schuh; Juan M. Banda; Tim Wylie; Patrick McInerney; Karthik Ganesan Pillai; Rafal A. Angryk (Astron. Comput., 2015)

Whole genome SNP genotype piecemeal imputation. - Yining Wang; Tim Wylie; Paul Stothard; Guohui Lin (BMC Bioinform., 2015)

An Interesting Gadget for Chain Pair Simplification. - Tim Wylie (CoRR, 2016)

Enabling high-dimensional range queries using kNN indexing techniques: approaches and empirical results. - Tim Wylie; Michael A. Schuh; Rafal A. Angryk (J. Comb. Optim., 2016)

Complexities for High-Temperature Two-Handed Tile Self-assembly. - Robert T. Schweller; Andrew Winslow; Tim Wylie (DNA, 2017)

Universal Shape Replicators via Self-Assembly with Attractive and Repulsive Forces. - Cameron T. Chalk; Erik D. Demaine; Martin L. Demaine; Eric Martinez; Robert T. Schweller; Luis Vega; Tim Wylie (SODA, 2017)

Concentration independent random number generation in tile self-assembly. - Cameron T. Chalk; Bin Fu; Eric Martinez; Robert T. Schweller; Tim Wylie (Theor. Comput. Sci., 2017)

Freezing Simulates Non-freezing Tile Automata. - Cameron T. Chalk; Austin Luchsinger; Eric Martinez; Robert T. Schweller; Andrew Winslow; Tim Wylie (DNA, 2018)

Self-Assembly of Any Shape with Constant Tile Types using High Temperature. - Cameron T. Chalk; Austin Luchsinger; Robert T. Schweller; Tim Wylie (ESA, 2018)

Optimal Staged Self-Assembly of General Shapes. - Cameron T. Chalk; Eric Martinez; Robert T. Schweller; Luis Vega; Andrew Winslow; Tim Wylie (Algorithmica, 2018)

Discrete Planar Map Matching. - Bin Fu; Robert T. Schweller; Tim Wylie (CCCG, 2019)

Full Tilt: Universal Constructors for General Shapes with Uniform External Forces. - Jose Balanza-Martinez; Austin Luchsinger; David Caballero; Rene Reyes; Angel A. Cantu; Robert T. Schweller; Luis Angel Garcia; Tim Wylie (SODA, 2019)

Nearly Constant Tile Complexity for any Shape in Two-Handed Tile Assembly. - Robert T. Schweller; Andrew Winslow; Tim Wylie (Algorithmica, 2019)

Full Tilt: Universal Constructors for General Shapes with Uniform External Forces. - Jose Balanza-Martinez; David Caballero; Angel A. Cantu; Luis Angel Garcia; Timothy Gomez; Austin Luchsinger; Rene Reyes; Robert T. Schweller; Tim Wylie (CoRR, 2019)

Optimal staged self-assembly of linear assemblies. - Cameron T. Chalk; Eric Martinez; Robert T. Schweller; Luis Vega; Andrew Winslow; Tim Wylie (Nat. Comput., 2019)

Self-assembly of shapes at constant scale using repulsive forces. - Austin Luchsinger; Robert T. Schweller; Tim Wylie (Nat. Comput., 2019)

Verification in staged tile self-assembly. - Robert T. Schweller; Andrew Winslow; Tim Wylie (Nat. Comput., 2019)

Relocating Units in Robot Swarms with Uniform Control Signals is PSPACE-Complete. - David Caballero; Angel A. Cantu; Timothy Gomez; Austin Luchsinger; Robert T. Schweller; Tim Wylie (CCCG, 2020)

Building Patterned Shapes in Robot Swarms with Uniform Control Signals. - David Caballero; Angel A. Cantu; Timothy Gomez; Austin Luchsinger; Robert T. Schweller; Tim Wylie (CCCG, 2020)

Signal Passing Self-Assembly Simulates Tile Automata. - Angel A. Cantu; Austin Luchsinger; Robert T. Schweller; Tim Wylie (ISAAC, 2020)

Hierarchical Shape Construction and Complexity for Slidable Polyominoes under Uniform External Forces. - Jose Balanza-Martinez; Timothy Gomez; David Caballero; Austin Luchsinger; Angel A. Cantu; Rene Reyes; Mauricio Flores; Robert T. Schweller; Tim Wylie (SODA, 2020)

Hardness of Reconfiguring Robot Swarms with Uniform External Control in Limited Directions. - David Caballero; Angel A. Cantu; Timothy Gomez; Austin Luchsinger; Robert T. Schweller; Tim Wylie (J. Inf. Process., 2020)

Covert Computation in Staged Self-Assembly: Verification Is PSPACE-Complete. - David Caballero; Timothy Gomez; Robert T. Schweller; Tim Wylie (ESA, 2021)

The Complexity of Multiple Handed Self-assembly. - David Caballero; Timothy Gomez; Robert T. Schweller; Tim Wylie (UCNC, 2021)

Covert Computation in Self-Assembled Circuits. - Angel A. Cantu; Austin Luchsinger; Robert T. Schweller; Tim Wylie (Algorithmica, 2021)

Fast reconfiguration of robot swarms with uniform control signals. - David Caballero; Angel A. Cantu; Timothy Gomez; Austin Luchsinger; Robert T. Schweller; Tim Wylie (Nat. Comput., 2021)

Reachability in Restricted Chemical Reaction Networks. - Robert M. Alaniz; Bin Fu; Timothy Gomez; Elise Grizzell; Andrew Rodriguez; Robert T. Schweller; Tim Wylie (CoRR, 2022)

Reconfiguration of Linear Surface Chemical Reaction Networks with Bounded State Change. - Robert M. Alaniz; Michael J. Coulombe; Erik D. Demaine; Bin Fu; Ryan Knobel; Timothy Gomez; Elise Grizzell; Andrew Rodriguez; Robert T. Schweller; Tim Wylie (CCCG, 2023)

Complexity of Reconfiguration in Surface Chemical Reaction Networks. - Robert M. Alaniz; Josh Brunner; Michael J. Coulombe; Erik D. Demaine; Jenny Diomidova; Timothy Gomez; Elise Grizzell; Ryan Knobel; Jayson Lynch; Andrew Rodriguez; Robert T. Schweller; Tim Wylie (DNA, 2023)

Covert Computation in the Abstract Tile-Assembly Model. - Robert M. Alaniz; David Caballero; Timothy Gomez; Elise Grizzell; Andrew Rodriguez; Robert T. Schweller; Tim Wylie (SAND, 2023)

Simulation of Multiple Stages in Single Bin Active Tile Self-assembly. - Sonya C. Cirlos; Timothy Gomez; Elise Grizzell; Andrew Rodriguez; Robert T. Schweller; Tim Wylie (UCNC, 2023)

Complexity of Reconfiguration in Surface Chemical Reaction Networks. - Robert M. Alaniz; Josh Brunner; Michael J. Coulombe; Erik D. Demaine; Yevhenii Diomidov; Ryan Knobel; Timothy Gomez; Elise Grizzell; Jayson Lynch; Andrew Rodriguez; Robert T. Schweller; Tim Wylie (CoRR, 2023)

Complexity of verification in self-assembly with prebuilt assemblies. - David Caballero; Timothy Gomez; Robert T. Schweller; Tim Wylie (J. Comput. Syst. Sci., 2023)

Unique Assembly Verification in Two-Handed Self-Assembly. - David Caballero; Timothy Gomez; Robert T. Schweller; Tim Wylie (Algorithmica, 2023)

Building squares with optimal state complexity in restricted active self-assembly. - Robert M. Alaniz; David Caballero; Sonya C. Cirlos; Timothy Gomez; Elise Grizzell; Andrew Rodriguez; Robert T. Schweller; Armando Tenorio; Tim Wylie (J. Comput. Syst. Sci., 2023)

Building Discrete Self-Similar Fractals in Seeded Tile Automata. - Ryan Knobel; Adrian Salinas; Robert T. Schweller; Tim Wylie (CCCG, 2024)

Row Shifting as a Puzzle Mechanic in Generalized Connect Four. - Jeff Cutsinger; Tim Wylie (CoG, 2024)

Computing Threshold Circuits with Void Reactions in Step Chemical Reaction Networks. - Rachel Anderson; Alberto Avila; Bin Fu; Timothy Gomez; Elise Grizzell; Aiden Massie; Gourab Mukhopadhyay; Adrian Salinas; Robert T. Schweller; Evan Tomai; Tim Wylie (MCU, 2024)

Computing Threshold Circuits with Bimolecular Void Reactions in Step Chemical Reaction Networks. - Rachel Anderson; Bin Fu; Aiden Massie; Gourab Mukhopadhyay; Adrian Salinas; Robert T. Schweller; Evan Tomai; Tim Wylie (UCNC, 2024)

A Simple Proof that Ricochet Robots is PSPACE-Complete. - Jose Balanza-Martinez; Angel A. Cantu; Robert T. Schweller; Tim Wylie (CoRR, 2024)

Intrinsic Universality in Seeded Active Tile Self-Assembly. - Timothy Gomez; Elise Grizzell; Asher Haun; Ryan Knobel; Tom Peters; Robert T. Schweller; Tim Wylie (CoRR, 2024)

Verification and computation in restricted Tile Automata. - David Caballero; Timothy Gomez; Robert T. Schweller; Tim Wylie (Nat. Comput., 2024)

Reachability in Deletion-Only Chemical Reaction Networks. - Bin Fu; Timothy Gomez; Ryan Knobel; Austin Luchsinger; Aiden Massie; Marco Rodriguez; Adrian Salinas; Robert T. Schweller; Tim Wylie (DNA, 2025)

Tile-Based Knot Assembly with Celtic! - Divya Bajaj; Ryan Knobel; Juan Manuel Perez; Rene Reyes; Ramiro Santos; Tim Wylie (IWOCA, 2025)

Brief Announcement: Reachability in Deletion-Only Chemical Reaction Networks. - Bin Fu; Timothy Gomez; Ryan Knobel; Austin Luchsinger; Aiden Massie; Marco Rodriguez; Adrian Salinas; Robert T. Schweller; Tim Wylie (SAND, 2025)

Brief Announcement: Intrinsic Universality in Seeded Active Tile Self-Assembly. - Timothy Gomez; Elise Grizzell; Asher Haun; Ryan Knobel; Tom Peters; Robert T. Schweller; Tim Wylie (SAND, 2025)

Fractals in Seeded Tile Automata. - Asher Haun; Ryan Knobel; Adrian Salinas; Ramiro Santos; Robert T. Schweller; Tim Wylie (SAND, 2025)

Reachability in restricted chemical reaction networks. - Robert M. Alaniz; Bin Fu; Timothy Gomez; Elise Grizzell; Andrew Rodriguez; Marco Rodriguez; Robert T. Schweller; Tim Wylie (Theor. Comput. Sci., 2025)

Uniform robot relocation is hard in only two directions even without obstacles. - David Caballero; Angel A. Cantu; Timothy Gomez; Austin Luchsinger; Robert T. Schweller; Tim Wylie (Nat. Comput., 2025)