Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. - Björn Sommer 001; Evgeny S. Tiys; Benjamin Kormeier; Klaus Hippe; Sebastian Janowski; Timofey V. Ivanisenko; Anatoly O. Bragin; Patrizio Arrigo; Pavel Demenkov; Alexey V. Kochetov; Vladimir A. Ivanisenko; Nikolay A. Kolchanov; et al. (J. Integr. Bioinform., 2010)

ANDVisio: A new tool for graphic visualization and analysis of literature mined associative gene networks in the ANDSystem. - Pavel Demenkov; Timofey V. Ivanisenko; Nikolay A. Kolchanov; Vladimir A. Ivanisenko (Silico Biol., 2012)

Text Mining on PubMed. - Timofey V. Ivanisenko; Pavel S. Demenkov; Vladimir A. Ivanisenko (Approaches in Integrative Bioinformatics, 2014)

Molecular association of pathogenetic contributors to pre-eclampsia (pre-eclampsia associome). - Andrey S. Glotov; Evgeny S. Tiys; Elena S. Vashukova; Vladimir S. Pakin; Pavel S. Demenkov; Olga V. Saik; Timofey V. Ivanisenko; Olga N. Arzhanova; Elena V. Mozgovaya; Marina S. Zainulina; Nikolay A. Kolchanov; Vladislav S. Baranov; et al. (BMC Syst. Biol., 2015)

ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology. - Vladimir A. Ivanisenko; Olga V. Saik; Nikita V. Ivanisenko; Evgeny S. Tiys; Timofey V. Ivanisenko; Pavel S. Demenkov; Nikolay A. Kolchanov (BMC Syst. Biol., 2015)

Search for New Candidate Genes Involved in the Comorbidity of Asthma and Hypertension Based on Automatic Analysis of Scientific Literature. - Olga V. Saik; Pavel S. Demenkov; Timofey V. Ivanisenko; Elena Yu. Bragina; Maxim B. Freidin; Victor E. Dosenko; Olga I. Zolotareva; Evgeniy L. Choynzonov; Ralf Hofestädt; Vladimir A. Ivanisenko (J. Integr. Bioinform., 2018)

A new version of the ANDSystem tool for automatic extraction of knowledge from scientific publications with expanded functionality for reconstruction of associative gene networks by considering tissue-specific gene expression. - Vladimir A. Ivanisenko; Pavel S. Demenkov; Timofey V. Ivanisenko; Elena L. Mishchenko; Olga V. Saik (BMC Bioinform., 2019)

ANDDigest: a new web-based module of ANDSystem for the search of knowledge in the scientific literature. - Timofey V. Ivanisenko; Olga V. Saik; Pavel S. Demenkov; Nikita V. Ivanisenko; Alexander N. Savostyanov; Vladimir A. Ivanisenko (BMC Bioinform., 2020)

Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection. - Evgeniya A. Antropova; Tamara M. Khlebodarova; Pavel S. Demenkov; Anastasiia R. Volianskaia; Artur S. Venzel; Nikita V. Ivanisenko; Alexandr D. Gavrilenko; Timofey V. Ivanisenko; Anna V. Adamovskaya; Polina M. Revva; Nikolay A. Kolchanov; Inna N. Lavrik; et al. (J. Integr. Bioinform., 2024)

Accurate noise-robust classification of Bacillus species from MALDI-TOF MS spectra using a denoising autoencoder. - Yulia E. Uvarova; Pavel S. Demenkov; Irina N. Kuzmicheva; Artur S. Venzel; Elena L. Mischenko; Timofey V. Ivanisenko; Vadim M. Efimov; Svetlana V. Bannikova; Asya R. Vasilieva; Vladimir A. Ivanisenko; Sergey E. Peltek (J. Integr. Bioinform., 2024)