The Role of Protein Flexibility in Molecular Motor Function: Coupled Diffusion in a Tilted Periodic Potential. - Charles S. Peskin; Timothy C. Elston (SIAM J. Appl. Math., 2000)

Protein Flexibility and the Correlation Ratchet. - Charles S. Peskin; Dwight You; Timothy C. Elston (SIAM J. Appl. Math., 2000)

Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks. - David Adalsteinsson; David R. McMillen; Timothy C. Elston (BMC Bioinform., 2004)

Dose-to-Duration Encoding and Signaling beyond Saturation in Intracellular Signaling Networks. - Marcelo Behar; Nan Hao; Henrik G. Dohlman; Timothy C. Elston (PLoS Comput. Biol., 2008)

Time-Domain Methods for Diffusive Transport in Soft Matter. - John Fricks; Lingxing Yao; Timothy C. Elston; M. Gregory Forest (SIAM J. Appl. Math., 2009)

Simulating Biochemical Signaling Networks in Complex Moving Geometries. - Wanda Strychalski; David Adalsteinsson; Timothy C. Elston (SIAM J. Sci. Comput., 2010)

A Whole-Body Model for Glycogen Regulation Reveals a Critical Role for Substrate Cycling in Maintaining Blood Glucose Homeostasis. - Ke Xu; Kevin T. Morgan; Abby Todd Gehris; Timothy C. Elston; Shawn M. Gomez (PLoS Comput. Biol., 2011)

Modeling the Excess Cell Surface Stored in a Complex Morphology of Bleb-Like Protrusions. - Maryna Kapustina; Denis Tsygankov; Jia Zhao 004; Timothy Wessler; Xiaofeng Yang 003; Alex Chen; Nathan Roach; Timothy C. Elston; Qi Wang 021; Ken Jacobson; M. Gregory Forest (PLoS Comput. Biol., 2016)

Testing the limits of gradient sensing. - Vinal V. Lakhani; Timothy C. Elston (PLoS Comput. Biol., 2017)

Principles that govern competition or co-existence in Rho-GTPase driven polarization. - Jian-Geng Chiou; Samuel A. Ramirez; Timothy C. Elston; Thomas P. Witelski; David G. Schaeffer; Daniel J. Lew (PLoS Comput. Biol., 2018)

Particle-based simulations of polarity establishment reveal stochastic promotion of Turing pattern formation. - Michael Pablo; Samuel A. Ramirez; Timothy C. Elston (PLoS Comput. Biol., 2018)

Mechanistic models of PLC/PKC signaling implicate phosphatidic acid as a key amplifier of chemotactic gradient sensing. - Jamie L. Nosbisch; Anisur Rahman; Krithika Mohan; Timothy C. Elston; James E. Bear; Jason M. Haugh (PLoS Comput. Biol., 2020)

A novel stochastic simulation approach enables exploration of mechanisms for regulating polarity site movement. - Samuel A. Ramirez; Michael Pablo; Sean Burk; Daniel J. Lew; Timothy C. Elston (PLoS Comput. Biol., 2021)

A Stochastic model for RNA splicing. - Alberto Giaretta 002; Khem Raj Ghusinga; Timothy C. Elston (ECC, 2022)

Spatial models of pattern formation during phagocytosis. - John Cody Herron; Shiqiong Hu; Bei Liu; Takashi Watanabe; Klaus M. Hahn; Timothy C. Elston (PLoS Comput. Biol., 2022)

Cesium: A public database of evolved oscillatory reaction networks. - Lillian T. Tatka; Wesley Luk; Timothy C. Elston; Joseph L. Hellerstein; Herbert M. Sauro (Biosyst., 2023)

Particle-based simulations reveal two positive feedback loops allow relocation and stabilization of the polarity site during yeast mating. - Kaiyun Guan; Erin R. Curtis; Daniel J. Lew; Timothy C. Elston (PLoS Comput. Biol., 2023)