From fold recognition to flexible docking. - Ruben Abagyan; Serge Batalov; Timothy Cardozo; Maxim Totrov (German Conference on Bioinformatics, 1997)

Estimating Local Backbone Structural Deviation in Homology Models. - Timothy Cardozo; Serge Batalov; Ruben Abagyan (Comput. Chem., 2000)

Effective neutralization and neutralization epitope masking signatures for four anti-V3 mAbs. - Alpna Agarwal; Susan Zolla-Pazner; James Swetnam; Timothy Cardozo (BCB, 2010)

CCR5/CXCR4 discriminating sites in the HIV-1 gp120 core. - Alpna Agarwal; Eron Oronsaye; Arthur Nadas; Susan Zolla-Pazner; Timothy Cardozo (BCB, 2011)

Recovering Protein-Protein and Domain-Domain Interactions from Aggregation of IP-MS Proteomics of Coregulator Complexes. - Amin R. Mazloom; Ruth Dannenfelser; Neil R. Clark; Arsen V. Grigoryan; Kathryn M. Linder; Timothy Cardozo; Julia C. Bond; Aislyn D. W. Boran; Ravi Iyengar; Anna Malovannaya; Rainer B. Lanz; Avi Ma'ayan (PLoS Comput. Biol., 2011)