Towards Run-Time Re-Configurable Techniques for Real-Time Embedded Applications. - Timothy F. Oliver; Douglas L. Maskell (Engineering of Reconfigurable Systems and Algorithms, 2003)

High Performance Biosequence Database Scanning on Reconfigurable Platforms. - Timothy F. Oliver; Bertil Schmidt (IPDPS, 2004)

Biological Sequence Analysis with Hidden Markov Models on an FPGA. - Jacop Yanto; Timothy F. Oliver; Bertil Schmidt; Douglas L. Maskell (Asia-Pacific Computer Systems Architecture Conference, 2005)

Hyper customized processors for bio-sequence database scanning on FPGAs. - Timothy F. Oliver; Bertil Schmidt; Douglas L. Maskell (FPGA, 2005)

An FPGA Model for Developing Dynamic Circuit Computing. - Timothy F. Oliver; Douglas L. Maskell (FPT, 2005)

Multiple Sequence Alignment on an FPGA. - Timothy F. Oliver; Bertil Schmidt; Douglas L. Maskell; Darran Nathan; Ralf Clemens (ICPADS (2), 2005)

A reconfigurable architecture for scanning biosequence databases. - Timothy F. Oliver; Bertil Schmidt; Douglas L. Maskell; Achutavarrier Prasad Vinod (ISCAS (5), 2005)

Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW. - Timothy F. Oliver; Bertil Schmidt; Darran Nathan; Ralf Clemens; Douglas L. Maskell (Bioinform., 2005)

Reconfigurable architectures for bio-sequence database scanning on FPGAs. - Timothy F. Oliver; Bertil Schmidt; Douglas L. Maskell (IEEE Trans. Circuits Syst. II Express Briefs, 2005)

Pre-Routed FPGA Cores for Rapid System Construction in a Dynamic Reconfigurable System. - Douglas L. Maskell; Timothy F. Oliver (Dynamically Reconfigurable Architectures, 2006)

Execution Objects for Dynamically Reconfigurable FPGA Systems. - Timothy F. Oliver; Douglas L. Maskell (FPL, 2006)

Accelerating the Viterbi Algorithm for Profile Hidden Markov Models Using Reconfigurable Hardware. - Timothy F. Oliver; Bertil Schmidt; Yanto Jakop; Douglas L. Maskell (International Conference on Computational Science (1), 2006)

High-speed Multiple Sequence Alignment on a reconfigurable platform. - Timothy F. Oliver; Bertil Schmidt; Douglas L. Maskell; Darran Nathan; Ralf Clemens (Int. J. Bioinform. Res. Appl., 2006)

High Performance Database Searching with HMMer on FPGAs. - Timothy F. Oliver; Leow Yuan Yeow; Bertil Schmidt (IPDPS, 2007)

C-Based Design Methodology for FPGA Implementation of ClustalW MSA. - Yan Lin Aung; Douglas L. Maskell; Timothy F. Oliver; Bertil Schmidt; William Bong (PRIB, 2007)

Prerouted FPGA Cores for Rapid System Construction in a Dynamic Reconfigurable System. - Timothy F. Oliver; Douglas L. Maskell (EURASIP J. Embed. Syst., 2007)

MPI-HMMER-Boost: Distributed FPGA Acceleration. - John Paul Walters; Xiandong Meng; Vipin Chaudhary; Timothy F. Oliver; Leow Yuan Yeow; Bertil Schmidt; Darran Nathan; Joseph I. Landman (J. VLSI Signal Process., 2007)

Integrating FPGA acceleration into HMMer. - Timothy F. Oliver; Leow Yuan Yeow; Bertil Schmidt (Parallel Comput., 2008)

High Speed Biological Sequence Analysis With Hidden Markov Models on Reconfigurable Platforms. - Timothy F. Oliver; Bertil Schmidt; Yanto Jakop; Douglas L. Maskell (IEEE Trans. Inf. Technol. Biomed., 2009)

Wire level encapsulation framework for increasing FPGA design productivity - Timothy F. Oliver (2009)