A new version of the RDP (Ribosomal Database Project). - Bonnie L. Maidak; James R. Cole; Charles T. Parker Jr.; George M. Garrity; Niels Larsen; Bing Li; Timothy G. Lilburn; Michael J. McCaughey; Gary J. Olsen; Ross A. Overbeek; Sakti Pramanik; Thomas M. Schmidt; et al. (Nucleic Acids Res., 1999)

The RDP (Ribosomal Database Project) continues. - Bonnie L. Maidak; James R. Cole; Timothy G. Lilburn; Charles T. Parker Jr.; Paul Saxman; Jason M. Stredwick; George M. Garrity; Bing Li; Gary J. Olsen; Sakti Pramanik; Thomas M. Schmidt; James M. Tiedje (Nucleic Acids Res., 2000)

The RDP-II (Ribosomal Database Project). - Bonnie L. Maidak; James R. Cole; Timothy G. Lilburn; Charles T. Parker Jr.; Paul Saxman; Ryan J. Farris; George M. Garrity; Gary J. Olsen; Thomas M. Schmidt; James M. Tiedje (Nucleic Acids Res., 2001)

Self-organizing and self-correcting classifications of biological data. - George M. Garrity; Timothy G. Lilburn (Bioinform., 2005)

Computational aspects of systematic biology. - Timothy G. Lilburn; Scott H. Harrison; James R. Cole; George M. Garrity (Briefings Bioinform., 2006)

Pathway Complements of Four Yersinia. - Jennifer L. Neary; Maribel Sanchez; Yufeng Wang 002; Timothy G. Lilburn (BIBE, 2007)

Lineage Specific Expansion in Vibrio Species. - Jianying Gu; Jennifer L. Neary; Audrey Moshfeghian; Hong Cai; Sos S. Agaian; Timothy G. Lilburn; Yufeng Wang 002 (BIOCOMP, 2007)

Metabolic pathway complements of Five Francisella strains. - Jennifer L. Neary; Anthony Montanez; Timothy G. Lilburn; Yufeng Wang 002 (BIOCOMP, 2007)

The Core and Pan-Genome of the Vibrionaceae. - Timothy G. Lilburn; Hong Cai; Jianying Gu (IJCBS, 2009)

Variation in the Predicted Biosynthetic Capabilities of Seven Vibrionaceae. - Jennifer L. Neary; Yufeng Wang 002; Timothy G. Lilburn (IJCBS, 2009)

Prediction of novel systems components in cell cycle regulation in malaria parasite by subnetwork alignments. - Hong Cai; Changjin Hong; Jianying Gu; Timothy G. Lilburn; Rui Kuang; Yufeng Wang 002 (BIBM, 2012)

Module-based subnetwork alignments reveal novel transcriptional regulators in malaria parasite Plasmodium falciparum. - Hong Cai; Changjin Hong; Jianying Gu; Timothy G. Lilburn; Rui Kuang; Yufeng Wang 002 (BMC Syst. Biol., 2012)

Network analysis reveals complex interactions in heat shock response in the malaria parasite. - Timothy G. Lilburn; Hong Cai; Jianying Gu; Zhan Zhou; Yufeng Wang 002 (BIBM, 2013)

A novel subnetwork alignment approach predicts new components of the cell cycle regulatory apparatus in Plasmodium falciparum. - Hong Cai; Changjin Hong; Timothy G. Lilburn; Armando L. Rodriguez; Sheng Chen; Jianying Gu; Rui Kuang; Yufeng Wang 002 (BMC Bioinform., 2013)

Heavy path mining reveals novel protein-protein associations in the malaria parasite plasmodium falciparum. - Xinran Yu; Turgay Korkmaz; Timothy G. Lilburn; Hong Cai; Jianying Gu; Yufeng Wang 002 (BIBM, 2014)

Exploring systems affected by the heat shock response in Plasmodium falciparum via protein association networks. - Timothy G. Lilburn; Hong Cai; Jianying Gu; Zhan Zhou; Yufeng Wang 002 (Int. J. Comput. Biol. Drug Des., 2014)

Predicting and exploring network components involved in pathogenesis in the malaria parasite via novel subnetwork alignments. - Hong Cai; Timothy G. Lilburn; Changjin Hong; Jianying Gu; Rui Kuang; Yufeng Wang 002 (BMC Syst. Biol., 2015)

Just-in-time expression of influential genes in the cellular networks of the malaria parasite Plasmodium falciparum during the red blood cycle. - Xinran Yu; Hao Zhang; Timothy G. Lilburn; Hong Cai; Jianying Gu; Turgay Korkmaz; Yufeng Wang 002 (BIBM, 2016)

PageRank influence analysis of protein-protein association networks in the malaria parasite Plasmodium falciparum. - Xinran Yu; Timothy G. Lilburn; Hong Cai; Jianying Gu; Turgay Korkmaz; Yufeng Wang 002 (Int. J. Comput. Biol. Drug Des., 2017)

Transcriptomic and network analyses combine to identify genes that drive the red blood cell cycle of Plasmodium falciparum. - Xinran Yu; Hao Zhang; Timothy G. Lilburn; Hong Cai; Jianying Gu; Turgay Korkmaz; Yufeng Wang 002 (Int. J. Data Min. Bioinform., 2017)