Avocado: Deep tensor factorization characterizes the human epigenome via imputation of tens of thousands of functional experiments. - Jacob M. Schreiber; Timothy J. Durham; William S. Noble; Jeffrey A. Bilmes (BCB, 2020)

MitoCarta3.0: an updated mitochondrial proteome now with sub-organelle localization and pathway annotations. - Sneha Rath; Rohit Sharma; Rahul Gupta; Tslil Ast; Connie Chan; Timothy J. Durham; Russell P. Goodman; Zenon Grabarek; Mary E. Haas; Wendy H. W. Hung; Pallavi R. Joshi; Alexis A. Jourdain; et al. (Nucleic Acids Res., 2021)