DMP3: A Dynamic Multilayer Perceptron Construction Algorithm. - Timothy L. Andersen; Tony R. Martinez (Int. J. Neural Syst., 2001)

Features for Neural Net Based Region Identification of Newspaper Documents. - Timothy L. Andersen; Wei Zhang (ICDAR, 2003)

Using artificial neural networks to identify headings in newspaper documents. - Wei Zhang; Timothy L. Andersen (IJCNN, 2003)

Study of style effects on OCR errors in the MEDLINE database. - Penny Garrison; Diane L. Davis; Timothy L. Andersen; Elisa H. Barney Smith (DRR, 2005)

A Fourier-descriptor-based character recognition engine implemented under the Gamera open-source document-processing framework. - Jared Hopkins; Timothy L. Andersen (DRR, 2005)

Text Degradations and OCR Training. - Elisa H. Barney Smith; Timothy L. Andersen (ICDAR, 2005)

Partitioning of the degradation space for OCR training. - Elisa H. Barney Smith; Timothy L. Andersen (DRR, 2006)

Absent Sequences: Nullomers and Primes. - Gregory Hampikian; Timothy L. Andersen (Pacific Symposium on Biocomputing, 2007)

Extending Page Segmentation Algorithms for Mixed-Layout Document Processing. - Amy Winder; Timothy L. Andersen; Elisa H. Barney Smith (ICDAR, 2011)

Proving the efficacy of complementary inputs for multilayer neural networks. - Timothy L. Andersen (IJCNN, 2011)

DockoMatic: Automated peptide analog creation for high throughput virtual screening. - Reed B. Jacob; Casey W. Bullock; Timothy L. Andersen; Owen M. McDougal (J. Comput. Chem., 2011)

Accessible High-Throughput Virtual Screening Molecular Docking Software for Students and Educators. - Reed B. Jacob; Timothy L. Andersen; Owen M. McDougal (PLoS Comput. Biol., 2012)

DockoMatic 2.0: High Throughput Inverse Virtual Screening and Homology Modeling. - Casey W. Bullock; Nicolas Cornia; Reed B. Jacob; Andrew Remm; Thomas Peavey; Ken Weekes; Chris Mallory; Julia T. Oxford; Owen M. McDougal; Timothy L. Andersen (J. Chem. Inf. Model., 2013)

Design of a flexible component gathering algorithm for converting cell-based models to graph representations for use in evolutionary search. - Marianna Budnikova; Jeffrey W. Habig; Daniel Lobo; Nicolas Cornia; Michael Levin 001; Timothy L. Andersen (BMC Bioinform., 2014)

GAMPMS: Genetic algorithm managed peptide mutant screening. - Thomas Long; Owen M. McDougal; Timothy L. Andersen (J. Comput. Chem., 2015)

Genetic Algorithm Managed Peptide Mutant Screening: Optimizing Peptide Ligands for Targeted Receptor Binding. - Matthew D. King; Thomas Long; Timothy L. Andersen; Owen M. McDougal (J. Chem. Inf. Model., 2016)

SPIDR: small-molecule peptide-influenced drug repurposing. - Matthew D. King; Thomas Long; Daniel L. Pfalmer; Timothy L. Andersen; Owen M. McDougal (BMC Bioinform., 2018)

Using pagerank to uncover patterns in search behavior induced by the bit flip operator. - Thomas M. Green; Timothy L. Andersen (GECCO Companion, 2020)