Fast Orientation Mapping from HARDI. - Evren Özarslan; Timothy M. Shepherd; Baba C. Vemuri; Stephen J. Blackband; Thomas H. Mareci (MICCAI, 2005)

Characterization of Anomalous Diffusion from MR Signal may be a New Probe to Tissue Microstructure. - Evren Özarslan; Peter J. Basser; Timothy M. Shepherd; Peter E. Thelwall; Baba C. Vemuri; Stephen J. Blackband (EMBC, 2006)

A nonparametric reconstruction and its matrix implementation for the diffusion orientation transform (DOT). - Evren Özarslan; Timothy M. Shepherd; Baba C. Vemuri; Stephen J. Blackband; Thomas H. Mareci (ISBI, 2006)

Resolution of complex tissue microarchitecture using the diffusion orientation transform (DOT). - Evren Özarslan; Timothy M. Shepherd; Baba C. Vemuri; Stephen J. Blackband; Thomas H. Mareci (NeuroImage, 2006)

Structural insights from high-resolution diffusion tensor imaging and tractography of the isolated rat hippocampus. - Timothy M. Shepherd; Evren Özarslan; Michael A. King; Thomas H. Mareci; Stephen J. Blackband (NeuroImage, 2006)

MR microscopy of rat hippocampal slice cultures: A novel model for studying cellular processes and chronic perturbations to tissue microstructure. - Timothy M. Shepherd; Bjorn Scheffler; Michael A. King; Greg J. Stanisz; Dennis A. Steindler; Stephen J. Blackband (NeuroImage, 2006)

Symmetric Positive 4th Order Tensors & Their Estimation from Diffusion Weighted MRI. - Angelos Barmpoutis; Bing Jian; Baba C. Vemuri; Timothy M. Shepherd (IPMI, 2007)

Tensor Splines for Interpolation and Approximation of DT-MRI With Applications to Segmentation of Isolated Rat Hippocampi. - Angelos Barmpoutis; Baba C. Vemuri; Timothy M. Shepherd; John R. Forder (IEEE Trans. Medical Imaging, 2007)

Postmortem interval alters the water relaxation and diffusion properties of rat nervous tissue - Implications for MRI studies of human autopsy samples. - Timothy M. Shepherd; Jeremy J. Flint; Peter E. Thelwall; Greg J. Stanisz; Thomas H. Mareci; Anthony T. Yachnis; Stephen J. Blackband (NeuroImage, 2009)

Temporal scaling characteristics of diffusion as a new MRI contrast: Findings in rat hippocampus. - Evren Özarslan; Timothy M. Shepherd; Cheng Guan Koay; Stephen J. Blackband; Peter J. Basser (NeuroImage, 2012)

Mean apparent propagator (MAP) MRI: A novel diffusion imaging method for mapping tissue microstructure. - Evren Özarslan; Cheng Guan Koay; Timothy M. Shepherd; Michal E. Komlosh; M. Okan Irfanoglu; Carlo Pierpaoli; Peter J. Basser (NeuroImage, 2013)

In vivo quantification of demyelination and recovery using compartment-specific diffusion MRI metrics validated by electron microscopy. - Ileana O. Jelescu; Magdalena Zurek; Kerryanne V. Winters; Jelle Veraart; Anjali Rajaratnam; Nathanael S. Kim; James S. Babb; Timothy M. Shepherd; Dmitry S. Novikov; Sungheon Gene Kim; Els Fieremans (NeuroImage, 2016)

Automatic segmentation of the spinal cord and intramedullary multiple sclerosis lesions with convolutional neural networks. - Charley Gros; Benjamin De Leener; Atef Badji; Josefina Maranzano; Dominique Eden; Sara M. Dupont; Jason Talbott; Ren Zhuoquiong; Yaou Liu; Tobias Granberg; Russell Ouellette; Yasuhiko Tachibana; et al. (CoRR, 2018)

Fingerprinting Orientation Distribution Functions in diffusion MRI detects smaller crossing angles. - Steven H. Baete; Martijn A. Cloos; Ying-Chia Lin; Dimitris G. Placantonakis; Timothy M. Shepherd; Fernando E. Boada (NeuroImage, 2019)

Multi-parametric quantitative in vivo spinal cord MRI with unified signal readout and image denoising. - Francesco Grussu; Marco Battiston; Jelle Veraart; Torben Schneider; Julien Cohen-Adad; Timothy M. Shepherd; Daniel C. Alexander; Els Fieremans; Dmitry S. Novikov; Claudia A. M. Gandini Wheeler-Kingshott (NeuroImage, 2020)

Effect of intravoxel incoherent motion on diffusion parameters in normal brain. - Casey Vieni; Benjamin Ades-aron; Bettina Conti; Eric E. Sigmund; Peter Riviello; Timothy M. Shepherd; Yvonne W. Lui; Dmitry S. Novikov; Els Fieremans (NeuroImage, 2020)

Approximating anatomically-guided PET reconstruction in image space using a convolutional neural network. - Georg Schramm; David Rigie; Thomas Vahle; Ahmadreza Rezaei; Koen Van Laere; Timothy M. Shepherd; Johan Nuyts; Fernando E. Boada (NeuroImage, 2021)

Stepwise Stochastic Dictionary Adaptation Improves Microstructure Reconstruction with Orientation Distribution Function Fingerprinting. - Patryk Filipiak; Timothy M. Shepherd; Lee Basler; Anthony Zuccolotto; Dimitris G. Placantonakis; Walter Schneider 002; Fernando E. Boada; Steven H. Baete (CDMRI@MICCAI, 2022)

Diffusion Phantom Study of Fiber Crossings at Varied Angles Reconstructed with ODF-Fingerprinting. - Patryk Filipiak; Timothy M. Shepherd; Lee Basler; Anthony Zuccolotto; Dimitris G. Placantonakis; Walter Schneider 002; Fernando E. Boada; Steven H. Baete (CDMRI@MICCAI, 2023)

Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge. - Gabriel Girard; Jonathan Rafael-Patino; Raphaël Truffet; Dogu Baran Aydogan; Nagesh Adluru; Veena A. Nair; Vivek Prabhakaran; Barbara B. Bendlin; Andrew L. Alexander; Sara Bosticardo; Ilaria Gabusi; Mario Ocampo-Pineda; et al. (NeuroImage, 2023)