GP3: GenePix post-processing program for automated analysis of raw microarray data. - M. R. Fielden; R. G. Halgren; E. Dere; Timothy R. Zacharewski (Bioinform., 2002)

Joint Genomic and Metabolomic Analysis of Toxic Dose-Response Experiments. - Gary L. Jahns; Nicholas J. DelRaso; Mark P. Westrick; Victor Chan; Nicholas V. Reo; Timothy R. Zacharewski (CSB Workshops, 2005)

Normalization of two-channel microarray experiments: a semiparametric approach. - Jeanette E. Eckel; C. Gennings; Terry M. Therneau; L. D. Burgoon; D. R. Boverhof; Timothy R. Zacharewski (Bioinform., 2005)

Generative modeling of single-cell gene expression for dose-dependent chemical perturbations. - Omar Kana; Rance Nault; David Filipovic; Daniel Marri; Timothy R. Zacharewski; Sudin Bhattacharya (Patterns, 2023)