Pharos: Collating protein information to shed light on the druggable genome. - Dac-Trung Nguyen; Stephen L. Mathias; Cristian Bologa; Søren Brunak; Nicolas F. Fernandez; Anna Gaulton; Anne Hersey; Jayme Holmes; Lars Juhl Jensen; Anneli Karlsson; Guixia Liu; Avi Ma'ayan; et al. (Nucleic Acids Res., 2017)

Novel Consensus Architecture To Improve Performance of Large-Scale Multitask Deep Learning QSAR Models. - Alexey V. Zakharov; Tongan Zhao; Dac-Trung Nguyen; Tyler Peryea; Timothy Sheils; Adam Yasgar; Ruili Huang; Noel Southall; Anton Simeonov (J. Chem. Inf. Model., 2019)

SmartGraph: a network pharmacology investigation platform. - Gergely Zahoránszky-Köhalmi; Timothy Sheils; Tudor I. Oprea (J. Cheminformatics, 2020)

TCRD and Pharos 2021: mining the human proteome for disease biology. - Timothy Sheils; Stephen L. Mathias; Keith J. Kelleher; Vishal B. Siramshetty; Dac-Trung Nguyen; Cristian Bologa; Lars Juhl Jensen; Dusica Vidovic; Amar Koleti; Stephan C. Schürer; Anna Waller; Jeremy J. Yang; et al. (Nucleic Acids Res., 2021)

NCATS Inxight Drugs: a comprehensive and curated portal for translational research. - Vishal B. Siramshetty; Ivan Grishagin; Ðac-Trung Nguyen; Tyler Peryea; Yulia Skovpen; Oleg Stroganov; Daniel Katzel; Timothy Sheils; Ajit Jadhav; Ewy A. Mathé; Noel Southall (Nucleic Acids Res., 2022)

RaMP-DB 2.0: a renovated knowledgebase for deriving biological and chemical insight from metabolites, proteins, and genes. - John C. Braisted; Andrew Patt; Cole Tindall; Timothy Sheils; Jorge Neyra; Kyle Spencer; Tara Eicher; Ewy A. Mathé (Bioinform., 2023)

Pharos 2023: an integrated resource for the understudied human proteome. - Keith J. Kelleher; Timothy Sheils; Stephen L. Mathias; Jeremy J. Yang; Vincent T. Metzger; Vishal B. Siramshetty; Dac-Trung Nguyen; Lars Juhl Jensen; Dusica Vidovic; Stephan C. Schürer; Jayme Holmes; Karlie R. Sharma; et al. (Nucleic Acids Res., 2023)

SmartGraph API: Programmatic Knowledge Mining in Network-Pharmacology Setting. - Gergely Zahoránszky-Köhalmi; Brandon Walker; Nathan Miller; Brett Yang; Dhatri V. L. Penna; Jessica Maine; Timothy Sheils; Ke Wang; Jennifer King; Hythem Sidky; Sridhar Vuyyuru; Jeyaraman Soundarajan; et al. (J. Chem. Inf. Model., 2024)