Using BASIN-ML for Machine Learning-Based Statistical Analysis and Reporting for Biofilm Datasets. - Sam Haas; Timothy W. Hartman; Bichar Dip Shrestha Gurung; Tuyen Do; Rajesh Kumar Sani; Venkataramana Gadhamshetty; Etienne Z. Gnimpieba (BIBM, 2022)

Transformer in Microbial Image Analysis: A Comparative Exploration of TransUNet, UNet, and DoubleUNet for SEM Image Segmentation. - Bichar Dip Shrestha Gurung; Anup Khanal; Timothy W. Hartman; Tuyen Do; Sandeep Chataut; Carol Lushbough; Venkataramana Gadhamshetty; Etienne Z. Gnimpieba (BIBM, 2023)

SIMPL - An Application for Cell and Microbe Tracking Using Machine Learning. - Sam Haas; Bichar Dip Shrestha Gurung; Timothy W. Hartman; Tuyen Do; Etienne Z. Gnimpieba (BIBM, 2023)

Applying the DeepSeqDock Harmonization Framework on Pseudomonas Aeruginosa Bacterial Biofilm Data. - Corey Zhao; Bichar Dip Shrestha Gurung; Timothy W. Hartman; Tuyen Do; Mariah M. Hoffman; Etienne Z. Gnimpieba (BIBM, 2024)

Biofilm marker discovery with cloud-based dockerized metagenomics analysis of microbial communities. - Etienne Z. Gnimpieba; Timothy W. Hartman; Tuyen Do; Jessica Zylla; Shiva Aryal; Samuel J. Haas; Diing D. M. Agany; Bichar Dip Shrestha Gurung; Valena Doe; Zelaikha B. Yosufzai; Daniel Pan; Ross Campbell; et al. (Briefings Bioinform., 2024)