ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping. - Shao-Ke Lou; Bing Ni; Leung-Yau Lo; Stephen Kwok-Wing Tsui; Ting-Fung Chan; Kwong-Sak Leung (Bioinform., 2011)

Detection of splicing events and multiread locations from RNA-seq data based on a geometric-tail (GT) distribution of intron length. - Shao-Ke Lou; Jing-Woei Li; Hao Qin; Aldrin Kay-Yuen Yim; Leung-Yau Lo; Bing Ni; Kwong-Sak Leung; Stephen Kwok-Wing Tsui; Ting-Fung Chan (BMC Bioinform., 2011)

The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability. - Jing-Woei Li; Dan M. Bolser; Magnus Manske; Federico Manuel Giorgi; Nikolay Vyahhi; Björn Usadel; Bernardo J. Clavijo; Ting-Fung Chan; Nathalie Wong; Daniel R. Zerbino; Maria Victoria Schneider (Briefings Bioinform., 2013)

ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution. - Jing-Woei Li; Raymond Wan 001; Chi-Shing Yu; Ngai Na Co; Nathalie Wong; Ting-Fung Chan (Bioinform., 2013)

Parallel architecture for DNA sequence inexact matching with Burrows-Wheeler Transform. - Yao Xin; Benben Liu; Biao Min; Will X. Y. Li; Ray C. C. Cheung; Anthony S. Fong; Ting-Fung Chan (Microelectron. J., 2013)

Query Modification through External Sources to Support Clinical Decisions. - Raymond Wan 001; Ting-Fung Chan; Jannifer Hiu-Kwan Man (TREC, 2014)

Computational identification of protein binding sites on RNAs using high-throughput RNA structure-probing data. - Xihao Hu; Thomas K. F. Wong; Zhi John Lu; Ting-Fung Chan; Terrence Chi-Kong Lau; Siu-Ming Yiu; Kevin Y. Yip (Bioinform., 2014)

Towards a More Accurate Error Model for BioNano Optical Maps. - Menglu Li; Angel C. Y. Mak; Ernest T. Lam; Pui-Yan Kwok; Ming Xiao; Kevin Y. Yip; Ting-Fung Chan; Siu-Ming Yiu (ISBRA, 2016)

An iterative algorithm for de novo optical map assembly. - Menglu Li; Siu-Ming Yiu; Ting-Fung Chan; Ernest T. Lam (BIBM, 2017)

OMTools: a software package for visualizing and processing optical mapping data. - Alden King-Yung Leung; Nana Jin; Kevin Y. Yip; Ting-Fung Chan (Bioinform., 2017)

OMBlast: alignment tool for optical mapping using a seed-and-extend approach. - Alden King-Yung Leung; Tsz-Piu Kwok; Raymond Wan 001; Ming Xiao; Pui-Yan Kwok; Kevin Y. Yip; Ting-Fung Chan (Bioinform., 2017)

A comprehensive web tool for toehold switch design. - Andrew Ching-Yuet To; David Ho-Ting Chu; Angela Ruoning Wang; Frances Cheuk-Yau Li; Alan Wai-On Chiu; Daisy Yuwei Gao; Chung Hang Jonathan Choi; Siu-Kai Kong; Ting-Fung Chan; King-Ming Chan; Kevin Y. Yip (Bioinform., 2018)

Self-supervised contrastive learning for integrative single cell RNA-seq data analysis. - Wenkai Han; Yuqi Cheng; Jiayang Chen; Huawen Zhong; Zhihang Hu; Siyuan Chen; Licheng Zong; Liang Hong; Ting-Fung Chan; Irwin King; Xin Gao 001; Yu Li 006 (Briefings Bioinform., 2022)

stVAE deconvolves cell-type composition in large-scale cellular resolution spatial transcriptomics. - Chen Li; Ting-Fung Chan; Can Yang 002; Zhixiang Lin (Bioinform., 2023)

Accurate identification of structural variations from cancer samples. - Le Li; Chenyang Hong; Jie Xu; Claire Yik-Lok Chung; Alden King-Yung Leung; Delbert Almerick T. Boncan; Lixin Cheng; Kwok-Wai Lo; Paul B. S. Lai; John Wong; Jingying Zhou; Alfred Sze-Lok Cheng; et al. (Briefings Bioinform., 2024)