Novel Strategy for Three-Dimensional Fragment-Based Lead Discovery. - Haoliang Yuan; Tao Lu; Ting Ran; Haichun Liu; Shuai Lu; Wenting Tai; Ying Leng; Weiwei Zhang; Jian Wang; Yadong Chen 001 (J. Chem. Inf. Model., 2011)

Fragment-based strategy for structural optimization in combination with 3D-QSAR. - Haoliang Yuan; Wenting Tai; Shihe Hu; Haichun Liu; Yanmin Zhang; Sihui Yao; Ting Ran; Shuai Lu; Zhipeng Ke; Xiao Xiong; Jinxing Xu; Yadong Chen 001; et al. (J. Comput. Aided Mol. Des., 2013)

An Integrated Virtual Screening Approach for VEGFR-2 Inhibitors. - Yanmin Zhang; Shangyan Yang; Yu Jiao; Haichun Liu; Haoliang Yuan; Shuai Lu; Ting Ran; Sihui Yao; Zhipeng Ke; Jinxing Xu; Xiao Xiong; Yadong Chen 001; et al. (J. Chem. Inf. Model., 2013)

Virtual Screening with a Structure-Based Pharmacophore Model to Identify Small-Molecule Inhibitors of CARM1. - Ting Ran; Wenjuan Li; Bingling Peng; Binglan Xie; Tao Lu; Shuai Lu; Wen Liu (J. Chem. Inf. Model., 2019)

Kinase Inhibitor Scaffold Hopping with Deep Learning Approaches. - Lizhao Hu; Yuyao Yang; Shuangjia Zheng; Jun Xu 017; Ting Ran; Hongming Chen 001 (J. Chem. Inf. Model., 2021)

De Novo Molecule Design Through the Molecular Generative Model Conditioned by 3D Information of Protein Binding Sites. - Mingyuan Xu; Ting Ran; Hongming Chen 001 (J. Chem. Inf. Model., 2021)

3D based generative PROTAC linker design with reinforcement learning. - Baiqing Li; Ting Ran; Hongming Chen 001 (Briefings Bioinform., 2023)

An extensive benchmark study on biomedical text generation and mining with ChatGPT. - Qijie Chen; Haotong Sun; Haoyang Liu; Yinghui Jiang; Ting Ran; Xurui Jin; Xianglu Xiao; Zhimin Lin; Hongming Chen 001; Zhangming Niu (Bioinform., 2023)

How Good are Current Pocket-Based 3D Generative Models?: The Benchmark Set and Evaluation of Protein Pocket-Based 3D Molecular Generative Models. - Haoyang Liu; Yifei Qin; Zhangming Niu; Mingyuan Xu; Jiaqiang Wu; Xianglu Xiao; Jinping Lei; Ting Ran; Hongming Chen 001 (J. Chem. Inf. Model., 2024)

NA-DB: An Online Database of Nucleoside Analogues. - Haolin Luo; Ting Ran; Ling Wang 008; Hongming Chen 001 (J. Chem. Inf. Model., 2025)