BinPacker: Packing-Based De Novo Transcriptome Assembly from RNA-seq Data. - Juntao Liu; Guojun Li; Zheng Chang; Ting Yu 010; Bingqiang Liu; Rick McMullen; Pengyin Chen; Xiuzhen Huang (PLoS Comput. Biol., 2016)

DCGR: feature extractions from protein sequences based on CGR via remodeling multiple information. - Zengchao Mu; Ting Yu 010; Enfeng Qi; Juntao Liu; Guojun Li (BMC Bioinform., 2019)

iPAC: a genome-guided assembler of isoforms via phasing and combing paths. - Ting Yu 010; Juntao Liu; Xin Gao 001; Guojun Li (Bioinform., 2020)

TransRef enables accurate transcriptome assembly by redefining accurate neo-splicing graphs. - Ting Yu 010; Renmin Han; Zhaoyuan Fang; Zengchao Mu; Hongyu Zheng; Juntao Liu (Briefings Bioinform., 2021)

FEGS: a novel feature extraction model for protein sequences and its applications. - Zengchao Mu; Ting Yu 010; Xiaoping Liu 002; Hongyu Zheng; Leyi Wei; Juntao Liu (BMC Bioinform., 2021)

Highly efficient clustering of long-read transcriptomic data with GeLuster. - Junchi Ma; Xiaoyu Zhao; Enfeng Qi; Renmin Han; Ting Yu 010; Guojun Li (Bioinform., 2024)