MixGCF: An Improved Training Method for Graph Neural Network-based Recommender Systems. - Tinglin Huang 001; Yuxiao Dong; Ming Ding 004; Zhen Yang 034; Wenzheng Feng; Xinyu Wang 001; Jie Tang 001 (KDD, 2021)

Learning Intents behind Interactions with Knowledge Graph for Recommendation. - Xiang Wang 010; Tinglin Huang 001; Dingxian Wang; Yancheng Yuan; Zhenguang Liu; Xiangnan He 001; Tat-Seng Chua (WWW, 2021)

BatchSampler: Sampling Mini-Batches for Contrastive Learning in Vision, Language, and Graphs. - Zhen Yang 034; Tinglin Huang 001; Ming Ding 004; Yuxiao Dong; Rex Ying; Yukuo Cen; Yangliao Geng; Jie Tang 001 (KDD, 2023)

Learning to Group Auxiliary Datasets for Molecule. - Tinglin Huang 001; Ziniu Hu; Rex Ying (NeurIPS, 2023)

Protein-Nucleic Acid Complex Modeling with Frame Averaging Transformer. - Tinglin Huang 001; Zhenqiao Song; Rex Ying; Wengong Jin (NeurIPS, 2024)

HEART: Learning better representation of EHR data with a heterogeneous relation-aware transformer. - Tinglin Huang 001; Syed Asad Rizvi; Rohan Krishna Thakur; Vimig Socrates; Meili Gupta; David van Dijk; R. Andrew Taylor; Rex Ying (J. Biomed. Informatics, 2024)

Experience Retrieval-Augmentation with Electronic Health Records Enables Accurate Discharge QA. - Justice Ou; Tinglin Huang 001; Yilun Zhao 001; Ziyang Yu; Peiqing Lu; Rex Ying (CoRR, 2025)

Beyond Feature Importance: Feature Interactions in Predicting Post-Stroke Rigidity with Graph Explainable AI. - Jiawei Xu 006; Yonggeon Lee; Anthony Elkommos Youssef; Eunjin Yun; Tinglin Huang 001; Tianjian Guo; Hamidreza Saber; Rex Ying; Ying Ding 001 (CoRR, 2025)

Scalable Generation of Spatial Transcriptomics from Histology Images via Whole-Slide Flow Matching. - Tinglin Huang 001; Tianyu Liu 005; Mehrtash Babadi; Wengong Jin; Rex Ying (CoRR, 2025)

HEIST: A Graph Foundation Model for Spatial Transcriptomics and Proteomics Data. - Hiren Madhu; João F. Rocha; Tinglin Huang 001; Siddharth Viswanath; Smita Krishnaswamy; Rex Ying (CoRR, 2025)

RephQA: Evaluating Readability of Large Language Models in Public Health Question Answering. - Weikang Qiu; Tinglin Huang 001; Ryan Rullo; Yucheng Kuang; Ali Maatouk; S. Raquel Ramos; Rex Ying (CoRR, 2025)