Homology modeling, model and software evaluation: three related resources. - Rolando Rodríguez; Glay Chinea; Nelia Lopez; Tirso Pons; Gert Vriend (Bioinform., 1998)

Computational Biology in Cuba: An Opportunity to Promote Science in a Developing Country. - Tirso Pons; Luis A. Montero; Juan P. Febles (PLoS Comput. Biol., 2007)

New parameterization approaches of the LIE method to improve free energy calculations of PlmII-Inhibitors complexes. - Pedro A. Valiente; Alejandro Gil L.; Paulo R. Batista; Ernesto Raúl Caffarena; Tirso Pons; Pedro Geraldo Pascutti (J. Comput. Chem., 2010)

Predicting Protein Relationshipsto Human Pathways througha Relational Learning ApproachBased on Simple Sequence Features. - Beatriz García Jiménez; Tirso Pons; Araceli Sanchis; Alfonso Valencia (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)

Structure-PPi: a module for the annotation of cancer-related single-nucleotide variants at protein-protein interfaces. - Miguel Vazquez; Alfonso Valencia; Tirso Pons (Bioinform., 2015)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)

Discovery of a Noncompetitive Open-Flap Selective Inhibitor of Plasmepsin II with Antiplasmodial Activity. - Pedro A. Valiente; Yasel Guerra; Maarten G. Wolf; Isel Pascual; Enrique Rudiño-Piñera; Isabelle Florent; Tirso Pons; Gerrit Groenhof (J. Chem. Inf. Model., 2025)