Editing, validating and translating of SBGN maps. - Tobias Czauderna; Christian Klukas; Falk Schreiber (Bioinform., 2010)

Novel Developments of the MetaCrop Information System for Facilitating Systems Biological Approaches. - Klaus Hippe; Christian Colmsee; Tobias Czauderna; Eva Grafahrend-Belau; Björn H. Junker; Christian Klukas; Uwe Scholz; Falk Schreiber; Stephan Weise (J. Integr. Bioinform., 2010)

HTPheno: An Image Analysis Pipeline for High-Throughput Plant Phenotyping. - Anja Hartmann; Tobias Czauderna; Roberto Hoffmann; Nils Stein; Falk Schreiber (BMC Bioinform., 2011)

Software support for SBGN maps: SBGN-ML and LibSBGN. - Martijn P. van Iersel; Alice Villéger; Tobias Czauderna; Sarah E. Boyd; Frank T. Bergmann; Augustin Luna; Emek Demir; Anatoly A. Sorokin; Ugur Dogrusöz; Yukiko Matsuoka; Akira Funahashi; Mirit I. Aladjem; et al. (Bioinform., 2012)

VANTED v2: a framework for systems biology applications. - Hendrik Rohn; Astrid Junker; Anja Hartmann; Eva Grafahrend-Belau; Hendrik Treutler; Matthias Klapperstück; Tobias Czauderna; Christian Klukas; Falk Schreiber (BMC Syst. Biol., 2012)

MetaCrop 2.0: managing and exploring information about crop plant metabolism. - Falk Schreiber; Christian Colmsee; Tobias Czauderna; Eva Grafahrend-Belau; Anja Hartmann; Astrid Junker; Björn H. Junker; Matthias Klapperstück; Uwe Scholz; Stephan Weise (Nucleic Acids Res., 2012)

OPTIMAS-DW, MetaCrop and VANTED: A Case Study for Data Integration, Curation and Visualisation in Life Sciences. - Christian Colmsee; Tobias Czauderna; Eva Grafahrend-Belau; Anja Hartmann; Matthias Lange 001; Martin Mascher; Stephan Weise; Uwe Scholz; Falk Schreiber (GI-Jahrestagung, 2013)

Conversion of KEGG metabolic pathways to SBGN maps including automatic layout. - Tobias Czauderna; Michael Wybrow; Kim Marriott; Falk Schreiber (BMC Bioinform., 2013)

Path2Models: large-scale generation of computational models from biochemical pathway maps. - Finja Büchel; Nicolas Rodriguez 001; Neil Swainston; Clemens Wrzodek; Tobias Czauderna; Roland Keller; Florian Mittag; Michael Schubert; Mihai Glont; Martin Golebiewski; Martijn P. van Iersel; Sarah M. Keating; et al. (BMC Syst. Biol., 2013)

Translation of SBGN maps: Process Description to Activity Flow. - Torsten Vogt; Tobias Czauderna; Falk Schreiber (BMC Syst. Biol., 2013)

Immersive Analytics. - Tom Chandler; Maxime Cordeil; Tobias Czauderna; Tim Dwyer; Jaroslaw Glowacki; Cagatay Goncu; Matthias Klapperstück; Karsten Klein 001; Kim Marriott; Falk Schreiber; Elliott Wilson (BDVA, 2015)

Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2 . - Huaiyu Mi; Falk Schreiber; Stuart L. Moodie; Tobias Czauderna; Emek Demir; Robin Haw; Augustin Luna; Nicolas Le Novère; Anatoly A. Sorokin; Alice Villéger (J. Integr. Bioinform., 2015)

Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2. - Anatoly A. Sorokin; Nicolas Le Novère; Augustin Luna; Tobias Czauderna; Emek Demir; Robin Haw; Huaiyu Mi; Stuart L. Moodie; Falk Schreiber; Alice Villéger (J. Integr. Bioinform., 2015)

Methoden und Algorithmen für die Systems Biology Graphical Notation. - Tobias Czauderna (2015)

ContextuWall: Peer Collaboration Using (Large) Displays. - Matthias Klapperstück; Tobias Czauderna; Cagatay Goncu; Jaroslaw Glowacki; Tim Dwyer; Falk Schreiber; Kim Marriott (BDVA, 2016)

Stereoscopic Space Map - Semi-immersive Configuration of 3D-stereoscopic Tours in Multi-display Environments. - Björn Sommer 001; Andreas Hamacher; Owen Kaluza; Tobias Czauderna; Matthias Klapperstück; Niklas Biere; Marco Civico; Bruce H. Thomas; David G. Barnes; Falk Schreiber (SD&A, 2016)

Toward Community Standards and Software for Whole-Cell Modeling. - Dagmar Waltemath; Jonathan R. Karr; Frank T. Bergmann; Vijayalakshmi Chelliah; Michael Hucka; Marcus Krantz; Wolfram Liebermeister; Pedro Mendes 001; Chris J. Myers; Pinar Pir; Begum Alaybeyoglu; Naveen K. Aranganathan; et al. (IEEE Trans. Biomed. Eng., 2016)

Immersive Isosurface Visualisation for Engineering Datasets. - Kadek Ananta Satriadi; Kingsley Stephens; Callum Atkinson; Maxime Cordeil; Tobias Czauderna (BDVA, 2017)

An Optimization Model for 3D Pipe Routing with Flexibility Constraints. - Gleb Belov; Tobias Czauderna; Amel Dzaferovic; Maria Garcia de la Banda; Michael Wybrow; Mark Wallace 001 (CP, 2017)

3D-Stereoscopic Immersive Analytics Projects at Monash University and University of Konstanz. - Björn Sommer 001; David G. Barnes; Sarah E. Boyd; Tom Chandler; Maxime Cordeil; Tobias Czauderna; Matthias Klapperstück; Karsten Klein 001; Toàn D. Nguyên; Hieu T. Nim; Kingsley Stephens; Dany Vohl; et al. (SD&A, 2017)

Streamline Selection for Comparative Visualization of 3D Fluid Simulation Result. - Shoko Sawada; Takayuki Itoh; Takashi Misaka; Shigeru Obayashi; Tobias Czauderna; Kingsley Stephens (IV, 2017)

Process Plant Layout Optimization: Equipment Allocation. - Gleb Belov; Tobias Czauderna; Maria Garcia de la Banda; Matthias Klapperstück; Ilankaikone Senthooran; Mitch Smith; Michael Wybrow; Mark Wallace 001 (CP, 2018)

Spatio-Temporal Visualization of Tweet Data around Tokyo Disneyland Using VR. - Kaya Okada; Mitsuo Yoshida 001; Takayuki Itoh; Tobias Czauderna; Kingsley Stephens (IUI Companion, 2018)

VR System for Spatio-Temporal Visualization of Tweet Data. - Kaya Okada; Mitsuo Yoshida 001; Takayuki Itoh; Tobias Czauderna; Kingsley Stephens (IV, 2018)

ContextuWall: Multi-site collaboration using display walls. - Matthias Klapperstück; Tobias Czauderna; Cagatay Goncu; Jaroslaw Glowacki; Tim Dwyer; Falk Schreiber; Kim Marriott (J. Vis. Lang. Comput., 2018)

Immersive Analytics Applications in Life and Health Sciences. - Tobias Czauderna; Jason Haga; Jinman Kim; Matthias Klapperstück; Karsten Klein 001; Torsten W. Kuhlen; Steffen Oeltze-Jafra; Björn Sommer 001; Falk Schreiber (Immersive Analytics, 2018)

Viewpoint Selection for Shape Comparison of Mode Water Regions in a VR Space. - Midori Yano; Takayuki Itoh; Yuusuke Tanaka; Daisuke Matsuoka; Fumiaki Araki; Tobias Czauderna; Kingsley Stephens (IV (1), 2019)

Augmented Reality Map Navigation with Freehand Gestures. - Kadek Ananta Satriadi; Barrett Ens; Maxime Cordeil; Bernhard Jenny; Tobias Czauderna; Wesley Willett (VR, 2019)

Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0. - Adrien Rougny; Vasundra Touré; Stuart L. Moodie; Irina Balaur; Tobias Czauderna; Hanna Borlinghaus; Ugur Dogrusoz; Alexander Mazein; Andreas Dräger; Michael L. Blinov; Alice Villéger; Robin Haw; et al. (J. Integr. Bioinform., 2019)

VR system for spatio-temporal visualization of tweet data and support of map exploration. - Kaya Okada; Mitsuo Yoshida 001; Takayuki Itoh; Tobias Czauderna; Kingsley Stephens (Multim. Tools Appl., 2019)

Systems biology graphical notation markup language (SBGNML) version 0.3. - Frank T. Bergmann; Tobias Czauderna; Ugur Dogrusoz; Adrien Rougny; Andreas Dräger; Vasundra Touré; Alexander Mazein; Michael L. Blinov; Augustin Luna (J. Integr. Bioinform., 2020)

Specifications of standards in systems and synthetic biology: status and developments in 2020. - Falk Schreiber; Björn Sommer 001; Tobias Czauderna; Martin Golebiewski; Thomas E. Gorochowski; Michael Hucka; Sarah M. Keating; Matthias König 003; Chris J. Myers; David P. Nickerson; Dagmar Waltemath (J. Integr. Bioinform., 2020)

Maps Around Me: 3D Multiview Layouts in Immersive Spaces. - Kadek Ananta Satriadi; Barrett Ens; Maxime Cordeil; Tobias Czauderna; Bernhard Jenny (Proc. ACM Hum. Comput. Interact., 2020)

OntoPlot: A Novel Visualisation for Non-hierarchical Associations in Large Ontologies. - Ying Yang; Michael Wybrow; Yuan-Fang Li; Tobias Czauderna; Yongqun He (IEEE Trans. Vis. Comput. Graph., 2020)

Streamline pair selection for comparative flow field visualization. - Shoko Sawada; Takayuki Itoh; Takashi Misaka; Shigeru Obayashi; Tobias Czauderna; Kingsley Stephens (Vis. Comput. Ind. Biomed. Art, 2020)

The Data Visualisation and Immersive Analytics Research Lab at Monash University. - Tim Dwyer; Maxime Cordeil; Tobias Czauderna; Pari Delir Haghighi; Barrett Ens; Sarah Goodwin; Bernhard Jenny; Kim Marriott; Michael Wybrow (Vis. Informatics, 2020)

Quantitative Data Visualisation on Virtual Globes. - Kadek Ananta Satriadi; Barrett Ens; Tobias Czauderna; Maxime Cordeil; Bernhard Jenny (CHI, 2021)

Human-Centred Feasibility Restoration. - Ilankaikone Senthooran; Matthias Klapperstück; Gleb Belov; Tobias Czauderna; Kevin Leo; Mark Wallace 001; Michael Wybrow; Maria Garcia de la Banda (CP, 2021)

Visual exploration of large metabolic models. - Michael Aichem; Tobias Czauderna; Yan Zhu 006; Jinxin Zhao; Matthias Klapperstück; Karsten Klein 001; Jian Li 052; Falk Schreiber (Bioinform., 2021)

Tangible Globes for Data Visualisation in Augmented Reality. - Kadek Ananta Satriadi; Jim Smiley; Barrett Ens; Maxime Cordeil; Tobias Czauderna; Benjamin Lee; Ying Yang; Tim Dwyer; Bernhard Jenny (CHI, 2022)

Towards a hybrid user interface for the visual exploration of large biomolecular networks using virtual reality. - Michael Aichem; Karsten Klein 001; Tobias Czauderna; Dimitar Garkov; Jinxin Zhao; Jian Li 052; Falk Schreiber (J. Integr. Bioinform., 2022)

Design considerations for representing systems biology information with the Systems Biology Graphical Notation. - Falk Schreiber; Tobias Czauderna (J. Integr. Bioinform., 2022)

A VR Office Applying Modern Search and Filter Concepts for Knowledge Workers. - Fanny Weidner; Laurenz Bischoff; Johannes Bätz; Robin Schöppach; Peter Meineke; Kevin Kambach; Jannick Mitsch; Andreas Motuzov; Martin Mieth; Andreas Schulz; Melissa Weidlich-Rau; Christian Roschke; et al. (HCI (17), 2023)

Human-centred feasibility restoration in practice. - Ilankaikone Senthooran; Matthias Klapperstück; Gleb Belov; Tobias Czauderna; Kevin Leo; Mark Wallace 001; Michael Wybrow; Maria Garcia de la Banda (Constraints An Int. J., 2023)

Layout of anatomical structures and blood vessels based on the foundational model of anatomy. - Niklas Gröne; Benjamin Grüneisen; Karsten Klein 001; Bernard de Bono; Tobias Czauderna; Falk Schreiber (J. Integr. Bioinform., 2024)

Sustainable software development in science - insights from 20 years of Vanted. - Falk Schreiber; Tobias Czauderna; Dimitar Garkov; Niklas Gröne; Karsten Klein 001; Matthias Lange 001; Uwe Scholz; Björn Sommer 001 (J. Integr. Bioinform., 2025)