Multivariate curve resolution of time course microarray data. - Peter D. Wentzell; Tobias K. Karakach; Sushmita Roy; M. Juanita Martinez; Christopher P. Allen; Margaret Werner-Washburne (BMC Bioinform., 2006)

EndoDB: a database of endothelial cell transcriptomics data. - Shawez Khan; Federico Taverna; Katerina Rohlenova; Lucas Treps; Vincent Geldhof; Laura de Rooij; Liliana Sokol; Andreas Pircher; Lena-Christin Conradi; Joanna Kalucka; Luc Schoonjans; Guy Eelen; et al. (Nucleic Acids Res., 2019)

BIOMEX: an interactive workflow for (single cell) omics data interpretation and visualization. - Federico Taverna; Jermaine Goveia; Tobias K. Karakach; Shawez Khan; Katerina Rohlenova; Lucas Treps; Abhishek Subramanian; Luc Schoonjans; Mieke Dewerchin; Guy Eelen; Peter Carmeliet (Nucleic Acids Res., 2020)

Error modelled gene expression analysis (EMOGEA) provides a superior overview of time course RNA-seq measurements and low count gene expression. - Jasmine Barra; Federico Taverna; Fabian Bong; Ibrahim Ahmed 008; Tobias K. Karakach (Briefings Bioinform., 2024)