Fast automated placement of polar hydrogen atoms in protein-ligand complexes. - Tobias Lippert; Matthias Rarey (J. Cheminformatics, 2009)

De novo design by pharmacophore-based searches in fragment spaces. - Tobias Lippert; Tanja Schulz-Gasch; Olivier Roche; Wolfgang Guba; Matthias Rarey (J. Comput. Aided Mol. Des., 2011)

NAOMI: On the Almost Trivial Task of Reading Molecules from Different File formats. - Sascha Urbaczek; Adrian Kolodzik; J. Robert Fischer; Tobias Lippert; Stefan Heuser; Inken Groth; Tanja Schulz-Gasch; Matthias Rarey (J. Chem. Inf. Model., 2011)