PINCAGE: probabilistic integration of cancer genomics data for perturbed gene identification and sample classification. - Michal P. Switnicki; Malene Juul; Tobias Madsen; Karina D. Sørensen; Jakob Skou Pedersen (Bioinform., 2016)

Significance evaluation in factor graphs. - Tobias Madsen; Asger Hobolth; Jens Ledet Jensen; Jakob Skou Pedersen (BMC Bioinform., 2017)

Regmex: a statistical tool for exploring motifs in ranked sequence lists from genomics experiments. - Morten Muhlig Nielsen; Paula Tataru; Tobias Madsen; Asger Hobolth; Jakob Skou Pedersen (Algorithms Mol. Biol., 2018)

ncdDetect2: improved models of the site-specific mutation rate in cancer and driver detection with robust significance evaluation. - Malene Juul; Tobias Madsen; Qianyun Guo; Johanna Bertl; Asger Hobolth; Manolis Kellis; Jakob Skou Pedersen (Bioinform., 2019)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)