Segment-based multiple sequence alignment. - Tobias Rausch; Anne-Katrin Emde; David Weese; Andreas Döring 001; Cédric Notredame; Knut Reinert (ECCB, 2008)

Fast and Adaptive Variable Order Markov Chain Construction. - Marcel H. Schulz; David Weese; Tobias Rausch; Andreas Döring 001; Knut Reinert; Martin Vingron (WABI, 2008)

SeqAn An efficient, generic C++ library for sequence analysis. - Andreas Döring 001; David Weese; Tobias Rausch; Knut Reinert (BMC Bioinform., 2008)

Robust consensus computation. - Tobias Rausch; Anne-Katrin Emde; Knut Reinert (BMC Bioinform., 2008)

A parallel genetic algorithm to discover patterns in genetic markers that indicate predisposition to multifactorial disease. - Tobias Rausch; Alun Thomas; Nicola J. Camp; Lisa A. Cannon-Albright; Julio C. Facelli (Comput. Biol. Medicine, 2008)

Web-Based Process Portals: Powering Business Process Management within Large Organisations. - Robert Strobl; Thomas Müllner; Tobias Rausch (CEC, 2009)

A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads. - Tobias Rausch; Sergey Koren; Gennady Denisov; David Weese; Anne-Katrin Emde; Andreas Döring 001; Knut Reinert (Bioinform., 2009)

Dissecting multiple sequence alignment methods: the analysis, design and development of generic multiple sequence alignment components in SeqAn. - Tobias Rausch (2010)

DELLY: structural variant discovery by integrated paired-end and split-read analysis. - Tobias Rausch; Thomas Zichner; Andreas Schlattl; Adrian M. Stütz; Vladimir Benes; Jan O. Korbel (Bioinform., 2012)

ToTem: a tool for variant calling pipeline optimization. - Nikola Tom; Ondrej Tom; Jitka Malcikova; Sarka Pavlova; Blanka Kubesova; Tobias Rausch; Miroslav Kolarík; Vladimir Benes; Vojtech Bystrý; Sarka Pospisilova (BMC Bioinform., 2018)

Alfred: interactive multi-sample BAM alignment statistics, feature counting and feature annotation for long- and short-read sequencing. - Tobias Rausch; Markus Hsi-Yang Fritz; Jan O. Korbel; Vladimir Benes (Bioinform., 2019)

VISOR: a versatile haplotype-aware structural variant simulator for short- and long-read sequencing. - Davide Bolognini; Ashley D. Sanders; Jan O. Korbel; Alberto Magi; Vladimir Benes; Tobias Rausch (Bioinform., 2020)