Augmenting Signaling Pathway Reconstructions. - Tobias Rubel; Anna M. Ritz (BCB, 2020)

Dropping diversity of products of large US firms: Models and measures. - Ananthan Nambiar; Tobias Rubel; James McCaull; Jon deVries; Mark A. Bedau (CoRR, 2021)

Graphery: interactive tutorials for biological network algorithms. - Heyuan Zeng; Jinbiao Zhang; Gabriel A. Preising; Tobias Rubel; Pramesh Singh; Anna M. Ritz (Nucleic Acids Res., 2021)

Leveraging Constraints Plus Dynamic Programming for the Large Dollo Parsimony Problem. - Junyan Dai; Tobias Rubel; Yunheng Han; Erin K. Molloy (WABI, 2023)

Dollo-CDP: a polynomial-time algorithm for the clade-constrained large Dollo parsimony problem. - Junyan Dai; Tobias Rubel; Yunheng Han; Erin K. Molloy (Algorithms Mol. Biol., 2024)

Fast, parallel, and cache-friendly suffix array construction. - Jamshed Khan; Tobias Rubel; Erin K. Molloy; Laxman Dhulipala; Rob Patro (Algorithms Mol. Biol., 2024)