Identifying DNA Strands Using a Kernel of Classified Sequences. - Guillermo Tonsmann; David D. Pollock; Wanjun Gu; Todd A. Castoe (CSIE (3), 2009)

Phylogenetics, likelihood, evolution and complexity. - A. P. Jason de Koning; Wanjun Gu; Todd A. Castoe; David D. Pollock (Bioinform., 2012)

GppFst: genomic posterior predictive simulations of FST and dXY for identifying outlier loci from population genomic data. - Richard H. Adams; Drew R. Schield; Daren C. Card; Heath Blackmon; Todd A. Castoe (Bioinform., 2017)

ThetaMater: Bayesian estimation of population size parameter θ from genomic data. - Richard H. Adams; Drew R. Schield; Daren C. Card; Andrew Corbin; Todd A. Castoe (Bioinform., 2018)

PhyloWGA: chromosome-aware phylogenetic interrogation of whole genome alignments. - Richard H. Adams; Todd A. Castoe; Michael Degiorgio (Bioinform., 2021)