QSRA - a quality-value guided de novo short read assembler. - Douglas W. Bryant Jr.; Weng-Keen Wong; Todd C. Mockler (BMC Bioinform., 2009)

Supersplat - spliced RNA-seq alignment. - Douglas W. Bryant Jr.; Rongkun Shen; Henry D. Priest; Weng-Keen Wong; Todd C. Mockler (Bioinform., 2010)

Cell-autonomous circadian clock of hepatocytes drives rhythms in transcription and polyamine synthesis. - Ann Atwood; Robert DeConde; Susanna S. Wang; Todd C. Mockler; Jamal S. M. Sabir; Trey Ideker; Steve A. Kay (Proc. Natl. Acad. Sci. USA, 2011)

TERRA-REF Data Processing Infrastructure. - Maxwell Burnette; Rob Kooper; J. D. Maloney; Gareth S. Rohde; Jeffrey A. Terstriep; Craig Willis; Noah Fahlgren; Todd C. Mockler; Maria Newcomb; Vasit Sagan; Pedro Andrade-Sanchez; Nadia Shakoor; et al. (PEARC, 2018)

UAV-Based High Resolution Thermal Imaging for Vegetation Monitoring, and Plant Phenotyping Using ICI 8640 P, FLIR Vue Pro R 640, and thermoMap Cameras. - Vasit Sagan; Maitiniyazi Maimaitijiang; Paheding Sidike; Kevin Eblimit; Kyle T. Peterson; Sean Hartling; Flavio Esposito; Kapil Khanal; Maria Newcomb; Duke Pauli; Rick Ward; Felix B. Fritschi; et al. (Remote. Sens., 2019)

Quantifying Leaf Chlorophyll Concentration of Sorghum from Hyperspectral Data Using Derivative Calculus and Machine Learning. - Sourav Bhadra; Vasit Sagan; Maitiniyazi Maimaitijiang; Matthew Maimaitiyiming; Maria Newcomb; Nadia Shakoor; Todd C. Mockler (Remote. Sens., 2020)

Classification and Visualization of Genotype × Phenotype Interactions in Biomass Sorghum. - Abby Stylianou; Robert Pless; Nadia Shakoor; Todd C. Mockler (ICCVW, 2021)

Classification and Visualization of Genotype x Phenotype Interactions in Biomass Sorghum. - Abby Stylianou; Robert Pless; Nadia Shakoor; Todd C. Mockler (CoRR, 2021)

FLIP: FLuorescence Imaging Pipeline for field-based chlorophyll fluorescence images. - Matthew T. Herritt; Jacob C. Long; Mike D. Roybal; David C. Moller Jr.; Todd C. Mockler; Duke Pauli; Alison L. Thompson (SoftwareX, 2021)

Comparing Deep Learning Approaches for Understanding Genotype × Phenotype Interactions in Biomass Sorghum. - Zeyu Zhang; Madison Pope; Nadia Shakoor; Robert Pless; Todd C. Mockler; Abby Stylianou (Frontiers Artif. Intell., 2022)

Data-Driven Artificial Intelligence for Calibration of Hyperspectral Big Data. - Vasit Sagan; Maitiniyazi Maimaitijiang; Paheding Sidike; Sourav Bhadra; Nichole Gosselin; Maxwell Burnette; Jeffrey Demieville; Sean Hartling; David S. LeBauer; Maria Newcomb; Duke Pauli; Kyle T. Peterson; et al. (IEEE Trans. Geosci. Remote. Sens., 2022)