Roundup: a multi-genome repository of orthologs and evolutionary distances. - Todd F. DeLuca; I-Hsien Wu; Jian Pu; Thomas Monaghan; Leonid Peshkin; Saurav Singh; Dennis P. Wall (Bioinform., 2006)

Detecting biological network organization and functional gene orthologs. - Jike Cui; Todd F. DeLuca; Jae-Yoon Jung; Dennis P. Wall (Bioinform., 2011)

Phylogenetically informed logic relationships improve detection of biological network organization. - Jike Cui; Todd F. DeLuca; Jae-Yoon Jung; Dennis P. Wall (BMC Bioinform., 2011)

Roundup 2.0: enabling comparative genomics for over 1800 genomes. - Todd F. DeLuca; Jike Cui; Jae-Yoon Jung; Kristian Che St. Gabriel; Dennis P. Wall (Bioinform., 2012)

A literature search tool for intelligent extraction of disease-associated genes. - Jae-Yoon Jung; Todd F. DeLuca; Tristan H. Nelson; Dennis P. Wall (J. Am. Medical Informatics Assoc., 2014)

Modeling wildfire using evolutionary cellular automata. - Maxfield E. Green; Todd F. DeLuca; Karl WD. Kaiser (GECCO, 2020)

Sirius: A Mutual Information Tool for Exploratory Visualization of Mixed Data. - Jane Lydia Adams; Todd F. DeLuca; Christopher M. Danforth; Peter Sheridan Dodds; Yuhang Zheng; Konstantinos Anastasakis; Boyoon Choi; Allison Min; Michael M. Bessey (CoRR, 2021)