SPrCY: comparison of structural predictions in the Saccharomyces cerevisiae genome. - Todd J. Dolinsky; P. M. J. Burgers; Kevin Karplus; Nathan A. Baker (Bioinform., 2004)

PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations. - Todd J. Dolinsky; Jens Erik Nielsen; James Andrew McCammon; Nathan A. Baker (Nucleic Acids Res., 2004)

Application of New Multiresolution Methods for the Comparison of Biomolecular Electrostatic Properties in the Absence of Global Structural Similarity. - Xiaoyu Zhang 011; Chandrajit L. Bajaj; Bong June Kwon; Todd J. Dolinsky; Jens Erik Nielsen; Nathan A. Baker (Multiscale Model. Simul., 2006)

PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. - Todd J. Dolinsky; Paul Czodrowski; Hui Li; Jens Erik Nielsen; Jan H. Jensen; Gerhard Klebe; Nathan A. Baker (Nucleic Acids Res., 2007)