Selective mapping: a discrete optimization approach to selecting a population subset for use in a high-density genetic mapping project. - Daniel G. Brown 001; Todd J. Vision; Steven D. Tanksley (SODA, 2000)

Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene Loss. - Jun Huan; Jan F. Prins; Wei Wang 010; Todd J. Vision (CSB, 2003)

Fast identification and statistical evaluation of segmental homologies in comparative maps. - Peter P. Calabrese; Sugata Chakravarty; Todd J. Vision (ISMB (Supplement of Bioinformatics), 2003)

Phytome: a platform for plant comparative genomics. - Stefanie Hartmann; Dihui Lu; Jason Phillips; Todd J. Vision (Nucleic Acids Res., 2006)

A computational system to select candidate genes for complex human traits. - Kyle J. Gaulton; Karen L. Mohlke; Todd J. Vision (Bioinform., 2007)

Comparison of full-text searching to metadata searching for genes in two biomedical literature cohorts. - Bradley M. Hemminger; Billy Saelim; Patrick F. Sullivan; Todd J. Vision (J. Assoc. Inf. Sci. Technol., 2007)

A hierarchical model for incomplete alignments in phylogenetic inference. - Fuxia Cheng; Stefanie Hartmann; Mayetri Gupta; Joseph G. Ibrahim; Todd J. Vision (Bioinform., 2009)

Evaluating data citation and sharing policies in the environmental sciences. - Nicholas M. Weber; Heather A. Piwowar; Todd J. Vision (ASIST, 2010)

Inferring species trees from gene duplication episodes. - J. Gordon Burleigh; Mukul S. Bansal; Oliver Eulenstein; Todd J. Vision (BCB, 2010)

Beginning to track 1000 datasets from public repositories into the published literature. - Heather A. Piwowar; Jonathan D. Carlson; Todd J. Vision (ASIST, 2011)

Employing Reasoning within the Phenoscape Knowledgebase. - James P. Balhoff; Wasila M. Dahdul; Hilmar Lapp; Peter E. Midford; Todd J. Vision; Monte Westerfield; Paula M. Mabee (ICBO, 2011)

Phenoscape: Use Cases and Anatomy Ontology Requirements for Linking Evolutionary and Model Organism Phenotypes. - Wasila M. Dahdul; James P. Balhoff; Hilmar Lapp; Peter E. Midford; Todd J. Vision; Monte Westerfield; Paula M. Mabee (ICBO, 2011)

Similarity Between Semantic Description Sets: Addressing Needs Beyond Data Integration. - Todd J. Vision; Judith A. Blake; Hilmar Lapp; Paula M. Mabee; Monte Westerfield (LISC, 2011)

DataONE: Data Observation Network for Earth - Preserving Data and Enabling Innovation in the Biological and Environmental Sciences. - William Michener; David Vieglais; Todd J. Vision; John A. Kunze; Patricia Cruse; Greg Janée (D Lib Mag., 2011)

Minimizing the number of episodes and Gallai's theorem on intervals - Éva Czabarka; László A. Székely; Todd J. Vision (CoRR, 2012)

The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes. - Peter E. Midford; Thomas Dececchi; James P. Balhoff; Wasila M. Dahdul; Nizar Ibrahim; Hilmar Lapp; John G. Lundberg; Paula M. Mabee; Paul C. Sereno; Monte Westerfield; Todd J. Vision; David C. Blackburn (J. Biomed. Semant., 2013)

Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex. - James P. Balhoff; Wasila M. Dahdul; Thomas Dececchi; Hilmar Lapp; Paula M. Mabee; Todd J. Vision (J. Biomed. Semant., 2014)

ODIN: the ORCID and DataCite interoperability network. - Martin Fenner; Laurel L. Haak; Gudmundur A. Thorisson; Sergio Ruiz; Todd J. Vision; Jan Brase (Int. J. Knowl. Learn., 2014)

What Factors Influence Where Researchers Deposit their Data? A Survey of Researchers Submitting to Data Repositories. - Shea Swauger; Todd J. Vision (Int. J. Digit. Curation, 2015)

Measuring the Importance of Annotation Granularity to the Detection of Semantic Similarity Between Phenotype Profiles. - Prashanti Manda; James P. Balhoff; Todd J. Vision (ICBO/BioCreative, 2016)

Investigating the Importance of Anatomical Homology for Cross-Species Phenotype Comparisons Using Semantic Similarity. - Prashanti Manda; Christopher J. Mungall; James P. Balhoff; Hilmar Lapp; Todd J. Vision (PSB, 2016)

Evolution of anatomical concept usage over time: mining 200 years of biodiversity literature. - Prashanti Manda; Todd J. Vision (SBD@SIGMOD, 2017)

Reasoning over Anatomical Homology in the Phenoscape KB. - Paula M. Mabee; James P. Balhoff; Wasila M. Dahdul; Hilmar Lapp; Christopher J. Mungall; Todd J. Vision (ICBO, 2018)

On the Statistical Sensitivity of Semantic Similarity Metrics. - Prashanti Manda; Todd J. Vision (ICBO, 2018)

Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems. - Wasila M. Dahdul; Prashanti Manda; Hong Cui; James P. Balhoff; T. Alexander Dececchi; Nizar Ibrahim; Hilmar Lapp; Todd J. Vision; Paula M. Mabee (Database J. Biol. Databases Curation, 2018)

'Computable' Phenotypes Enable Comparative and Predictive Phenomics Among Plant Species and Across Domains of Life. - Ian Braun; James P. Balhoff; Tanya Z. Berardini; Laurel Cooper; Georgios V. Gkoutos; Lisa C. Harper; Eva Huala; Pankaj Jaiswal; Toni Kazic; Hilmar Lapp; James A. Macklin; Chelsea D. Specht; et al. (Application of Semantic Technology in Biodiversity Science, 2018)

Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology. - Paula M. Mabee; Wasila M. Dahdul; James P. Balhoff; Hilmar Lapp; Prashanti Manda; Josef C. Uyeda; Todd J. Vision; Monte Westerfield (Application of Semantic Technology in Biodiversity Science, 2018)

Avoiding "conflicts of interest": a computational approach to scheduling parallel conference tracks and its human evaluation. - Prashanti Manda; Alexander Hahn 002; Katherine Beekman; Todd J. Vision (PeerJ Comput. Sci., 2019)

Avoiding "conflicts of interest": A computational approach to scheduling parallel conference tracks and its human evaluation. - Prashanti Manda; Alexander Hahn 002; Katherine Lamm; Scott Provan; Todd J. Vision (PeerJ Prepr., 2019)