Building Gold Standard Corpora for Medical Natural Language Processing Tasks. - Louise Deléger; Qi Li 004; Todd Lingren; Megan Kaiser; Katalin Molnár; Laura Stoutenborough; Michal Kouril; Keith Marsolo; Imre Solti (AMIA, 2012)

Using Natural Language Processing and the Electronic Health Record for Appendicitis Risk Stratification. - Louise Deléger; Holly Brodzinski; Haijun Zhai; Qi Li 004; Todd Lingren; Eric S. Kirkendall; Evaline Alessandrini; Imre Solti (HISB, 2012)

Linking Medications and Their Attributes in Clinical Notes and Clinical Trial Announcements for Information Extraction: A Sequence Labeling Approach. - Qi Li 004; Haijun Zhai; Louise Deléger; Todd Lingren; Megan Kaiser; Laura Stoutenborough; Imre Solti (HISB, 2012)

Pre-annotating Clinical Notes and Clinical Trial Announcements for Gold Standard Corpus Development: Evaluating the Impact on Annotation Speed and Potential Bias. - Todd Lingren; Louise Deléger; Katalin Molnár; Haijun Zhai; Jareen Meinzen-Derr; Megan Kaiser; Laura Stoutenborough; Qi Li 004; Imre Solti (HISB, 2012)

Cheap, Fast, and Good Enough for the Non-biomedical Domain but is It Usable for Clinical Natural Language Processing? Evaluating Crowdsourcing for Clinical Trial Announcement Named Entity Annotations. - Haijun Zhai; Todd Lingren; Louise Deléger; Qi Li 004; Megan Kaiser; Laura Stoutenborough; Imre Solti (HISB, 2012)

Predicting the Need for Pediatric Intensive Care Unit (PICU) Transfer for Newly Hospitalized Children with Machine Learning. - Haijun Zhai; Patrick Brady; Qi Li 004; Todd Lingren; Yizhao Ni; Derek S. Wheeler; Imre Solti (AMIA, 2013)

Large-scale evaluation of automated clinical note de-identification and its impact on information extraction. - Louise Deléger; Katalin Molnár; Guergana Savova; Fei Xia 004; Todd Lingren; Qi Li 004; Keith Marsolo; Anil G. Jegga; Megan Kaiser; Laura Stoutenborough; Imre Solti (J. Am. Medical Informatics Assoc., 2013)

A sequence labeling approach to link medications and their attributes in clinical notes and clinical trial announcements for information extraction. - Qi Li 004; Haijun Zhai; Louise Deléger; Todd Lingren; Megan Kaiser; Laura Stoutenborough; Imre Solti (J. Am. Medical Informatics Assoc., 2013)

Mining FDA drug labels for medical conditions. - Qi Li 004; Louise Deléger; Todd Lingren; Haijun Zhai; Megan Kaiser; Laura Stoutenborough; Anil G. Jegga; Kevin Bretonnel Cohen; Imre Solti (BMC Medical Informatics Decis. Mak., 2013)

Detecting Epilepsy Diagnosis in Clinical Notes: A Comparison of Traditional Text Classification Methods. - Todd Lingren; Pawel Matykiewicz; Yizhao Ni; Shannon M. Standridge; Katherine D. Holland; Imre Solti; Tracy A. Glauser; John Pestian (AMIA, 2014)

Automated Clinical Trial Eligibility Pre-Screening: Increasing the Efficiency of Participant Identification for Clinical Trials. - Yizhao Ni; Stephanie Kennebeck; Constance M. McAneney; Judith W. Dexheimer; Todd Lingren; Qi Li 004; Haijun Zhai; Imre Solti (AMIA, 2014)

Research and applications: Phenotyping for patient safety: algorithm development for electronic health record based automated adverse event and medical error detection in neonatal intensive care. - Qi Li 004; Kristin Melton; Todd Lingren; Eric S. Kirkendall; Eric S. Hall; Haijun Zhai; Yizhao Ni; Megan Kaiser; Laura Stoutenborough; Imre Solti (J. Am. Medical Informatics Assoc., 2014)

Evaluating the impact of pre-annotation on annotation speed and potential bias: natural language processing gold standard development for clinical named entity recognition in clinical trial announcements. - Todd Lingren; Louise Deléger; Katalin Molnár; Haijun Zhai; Jareen Meinzen-Derr; Megan Kaiser; Laura Stoutenborough; Qi Li 004; Imre Solti (J. Am. Medical Informatics Assoc., 2014)

Preparing an annotated gold standard corpus to share with extramural investigators for de-identification research. - Louise Deléger; Todd Lingren; Yizhao Ni; Megan Kaiser; Laura Stoutenborough; Keith Marsolo; Michal Kouril; Katalin Molnár; Imre Solti (J. Biomed. Informatics, 2014)

Desiderata for computable representations of electronic health records-driven phenotype algorithms. - Huan Mo; William K. Thompson; Luke V. Rasmussen; Jennifer A. Pacheco; Guoqian Jiang; Richard C. Kiefer; Qian Zhu 003; Jie Xu 011; Enid N. H. Montague; David S. Carrell; Todd Lingren; Frank D. Mentch; et al. (J. Am. Medical Informatics Assoc., 2015)

Automated clinical trial eligibility prescreening: increasing the efficiency of patient identification for clinical trials in the emergency department. - Yizhao Ni; Stephanie Kennebeck; Judith W. Dexheimer; Constance M. McAneney; Huaxiu Tang; Todd Lingren; Qi Li 004; Haijun Zhai; Imre Solti (J. Am. Medical Informatics Assoc., 2015)

Automated detection of medication administration errors in neonatal intensive care. - Qi Li 004; Eric S. Kirkendall; Eric S. Hall; Yizhao Ni; Todd Lingren; Megan Kaiser; Nataline Lingren; Haijun Zhai; Imre Solti; Kristin Melton (J. Biomed. Informatics, 2015)

An end-to-end hybrid algorithm for automated medication discrepancy detection. - Qi Li 004; Stephen Andrew Spooner; Megan Kaiser; Nataline Lingren; Jessica Robbins; Todd Lingren; Huaxiu Tang; Imre Solti; Yizhao Ni (BMC Medical Informatics Decis. Mak., 2015)

Increasing the efficiency of trial-patient matching: automated clinical trial eligibility Pre-screening for pediatric oncology patients. - Yizhao Ni; Jordan Wright; John Perentesis; Todd Lingren; Louise Deléger; Megan Kaiser; Isaac S. Kohane; Imre Solti (BMC Medical Informatics Decis. Mak., 2015)

Developing an Algorithm to Detect Early Childhood Obesity in Two Tertiary Pediatric Medical Centers. - Cassandra Brady; Bahram Namjou; Stephanie Kennebeck; Jonathan Bickel; Nandan Patibandla; Yizhao Ni; Sara Van Driest; Lixin Chen; Ashton Roach; Beth Cobb; Jacqueline Kirby; Joshua C. Denny; et al. (Appl. Clin. Inform., 2016)

PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability. - Jacqueline Kirby; Peter Speltz; Luke V. Rasmussen; Melissa A. Basford; Omri Gottesman; Peggy L. Peissig; Jennifer A. Pacheco; Gerard Tromp; Jyotishman Pathak; David S. Carrell; Stephen B. Ellis; Todd Lingren; et al. (J. Am. Medical Informatics Assoc., 2016)

Integrating Smart Pump Infusion Data with Electronic Health Record Data to Analyze Medication Administration Alerts. - Todd Lingren; Yizhao Ni; Eric S. Hall; Matthew Leonard; Eric S. Kirkendall; Kristin Melton (AMIA, 2017)

Electronic medical records as a replacement for prospective research data collection in postoperative pain and opioid response studies. - Todd Lingren; Senthilkumar Sadhasivam; Xue Zhang; Keith Marsolo (Int. J. Medical Informatics, 2018)

Decentralized and reproducible geocoding and characterization of community and environmental exposures for multisite studies. - Cole Brokamp; Chris Wolfe; Todd Lingren; John Harley; Patrick B. Ryan (J. Am. Medical Informatics Assoc., 2018)

Designing and evaluating an automated system for real-time medication administration error detection in a neonatal intensive care unit. - Yizhao Ni; Todd Lingren; Eric S. Hall; Matthew Leonard; Kristin Melton; Eric S. Kirkendall (J. Am. Medical Informatics Assoc., 2018)

Facilitating phenotype transfer using a common data model. - George Hripcsak; Ning Shang; Peggy L. Peissig; Luke V. Rasmussen; Cong Liu 020; Barbara Benoit; Robert J. Carroll; David S. Carrell; Joshua C. Denny; Ozan Dikilitas; Vivian S. Gainer; Kayla Marie Howell; et al. (J. Biomed. Informatics, 2019)

Making work visible for electronic phenotype implementation: Lessons learned from the eMERGE network. - Ning Shang; Cong Liu 020; Luke V. Rasmussen; Casey N. Ta; Robert J. Carroll; Barbara Benoit; Todd Lingren; Ozan Dikilitas; Frank D. Mentch; David S. Carrell; Wei-Qi Wei; Yuan Luo 001; et al. (J. Biomed. Informatics, 2019)

Evaluation of the Portability of Natural Language Processing-based Computable Phenotypes in the eMERGE Network. - Jennifer A. Pacheco; Luke V. Rasmussen; Ken Wiley; Thomas N. Person; David J. Cronkite; Sunghwan Sohn; Shawn N. Murphy; Justin H. Gundelach; Vivian S. Gainer; Victor M. Castro; Cong Liu 020; Todd Lingren; et al. (AMIA, 2021)