Filtering error from SOLiD Output. - Ariella Sasson; Todd P. Michael (Bioinform., 2010)

SOPRA: Scaffolding algorithm for paired reads via statistical optimization. - Adel Dayarian; Todd P. Michael; Anirvan M. Sengupta (BMC Bioinform., 2010)

PanKmer: k-mer-based and reference-free pangenome analysis. - Anthony J. Aylward; Semar Petrus; Allen Mamerto; Nolan T. Hartwick; Todd P. Michael (Bioinform., 2023)