CTSS: A Robust and Efficient Method for Protein Structure Alignment Based on Local Geometrical and Biological Feature. - Tolga Can; Yuan-Fang Wang (CSB, 2003)

FPV: Fast Protein Visualization Using Java 3D. - Tolga Can; Yujun Wang; Yuan-Fang Wang; Jianwen Su (SAC, 2003)

FPV: Fast Protein Visualization Using Java 3DTM. - Tolga Can; Yujun Wang; Yuan-Fang Wang; Jianwen Su (Bioinform., 2003)

Automated Protein Classification Using Consensus Decision. - Tolga Can; Orhan Çamoglu; Ambuj K. Singh; Yuan-Fang Wang (CSB, 2004)

ProGreSS: Simultaneous Searching of Protein Databases by Sequence and Structure. - Arnab Bhattacharya 001; Tolga Can; Tamer Kahveci; Ambuj K. Singh; Yuan-Fang Wang (Pacific Symposium on Biocomputing, 2004)

Protein Structure Alignment and Fast Similarity Search Using Local Shape Signatures. - Tolga Can; Yuan-Fang Wang (J. Bioinform. Comput. Biol., 2004)

Analysis of protein-protein interaction networks using random walks. - Tolga Can; Orhan Çamoglu; Ambuj K. Singh (BIOKDD, 2005)

Decision Tree Based Information Integration for Automated Protein Classification. - Orhan Çamoglu; Tolga Can; Ambuj K. Singh; Yuan-Fang Wang (J. Bioinform. Comput. Biol., 2005)

Integrating multi-attribute similarity networks for robust representation of the protein space. - Orhan Çamoglu; Tolga Can; Ambuj K. Singh (Bioinform., 2006)

Searching for repeated video sequences. - Tolga Can; Pinar Duygulu (Multimedia Information Retrieval, 2007)

Discovering functional interaction patterns in protein-protein interaction networks. - Mehmet E. Turanalp; Tolga Can (BMC Bioinform., 2008)

Text classification in the Turkish marketing domain for context sensitive ad distribution. - Melih Engin; Tolga Can (ISCIS, 2009)

Accurate and Scalable Techniques for the Complex/Pathway Membership Problem in Protein Networks. - Orhan Çamoglu; Tolga Can; Ambuj K. Singh (Adv. Bioinformatics, 2009)

RRW: repeated random walks on genome-scale protein networks for local cluster discovery. - Kathy Macropol; Tolga Can; Ambuj K. Singh (BMC Bioinform., 2009)

Integration of topological measures for eliminating non-specific interactions in protein interaction networks. - Murat Ali Bayir; Tacettin Dogacan Guney; Tolga Can (Discret. Appl. Math., 2009)

Bi-k-bi clustering: mining large scale gene expression data using two-level biclustering. - Levent Çarkacioglu; Rengül Çetin-Atalay; Özlen Konu; Volkan Atalay; Tolga Can (Int. J. Data Min. Bioinform., 2010)

A design goal and design pattern based approach for development of game engines for mobile platforms. - Ali G. Peker; Tolga Can (CGAMES, 2011)

Parallelization of the functional flow algorithm for prediction of protein function using protein-protein interaction networks. - Emrah Akkoyun; Tolga Can (HPCS, 2011)

Using network context as a filter for miRNA target prediction. - Merter Sualp; Tolga Can (Biosyst., 2011)

Large-Scale Signaling Network Reconstruction. - Seyedsasan Hashemikhabir; Eyüp Serdar Ayaz; Yusuf Kavurucu; Tolga Can; Tamer Kahveci (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

A Divide and Conquer Approach for Construction of Large-Scale Signaling Networks from PPI and RNAi Data Using Linear Programming. - Oyku Eren Ozsoy; Tolga Can (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Unsupervised identification of redundant domain entries in InterPro database using clustering techniques. - Ahmet Süreyya Rifaioglu; Tunca Dogan; Tolga Can (BCB, 2015)

The CHEMDNER corpus of chemicals and drugs and its annotation principles. - Martin Krallinger; Obdulia Rabal; Florian Leitner; Miguel Vazquez; David Salgado; Zhiyong Lu; Robert Leaman; Yanan Lu; Donghong Ji; Daniel M. Lowe; Roger A. Sayle; Riza Theresa Batista-Navarro; et al. (J. Cheminformatics, 2015)

SUMONA: A supervised method for optimizing network alignment. - Erhun Giray Tuncay; Tolga Can (Comput. Biol. Chem., 2016)

A multiplex primer design algorithm for target amplification of continuous genomic regions. - Ahmet Rasit Ozturk; Tolga Can (BMC Bioinform., 2017)

Comparison of tissue/disease specific integrated networks using directed graphlet signatures. - Arzu Burcak Sonmez; Tolga Can (BMC Bioinform., 2017)

Joint Overlap Analysis of Multiple Genomic Interval Sets. - Burçak Otlu; Tolga Can (CoRR, 2018)

JOA: Joint Overlap Analysis of multiple genomic interval sets. - Burçak Otlu; Tolga Can (BMC Bioinform., 2019)

A new statistical model for extreme rainfall: POT-KumGP. - Senem Tekin; Emrah Altun; Tolga Can (Earth Sci. Informatics, 2021)

MotifGenie: a Python application for searching transcription factor binding sequences using ChIP-Seq datasets. - Çerag Oguztüzün; Pelin Yasar; Kerim Yavuz; Mesut Muyan; Tolga Can (Bioinform., 2021)