Variable-Density Parallel Imaging With Partially Localized Coil Sensitivities. - Tolga Çukur; Juan M. Santos; John M. Pauly; Dwight G. Nishimura (IEEE Trans. Medical Imaging, 2010)

Signal Compensation and Compressed Sensing for Magnetization-Prepared MR Angiography. - Tolga Çukur; Michael Lustig; Emine Ulku Saritas; Dwight G. Nishimura (IEEE Trans. Medical Imaging, 2011)

Accelerated Phase-Cycled SSFP Imaging With Compressed Sensing. - Tolga Çukur (IEEE Trans. Medical Imaging, 2015)

Compressed Multi-Contrast Magnetic Resonance Image reconstruction using Augmented Lagrangian Method. - Alper Gungor; Emre Kopanoglu; Tolga Çukur; H. Emre Guven (SIU, 2016)

Adaptive reconstruction for vessel preservation in unenhanced MR angiography. - Efe Ilicak; Suheyla Cetin; Emine Ulku Saritas; Gozde B. Unal; Tolga Çukur (SIU, 2016)

Simultaneous phase-correction and denoising for diffusion-weighted MRI. - Sevgi Gokce Kafali; Tolga Çukur; Emine Ulku Saritas (SIU, 2016)

Phase-sensitive reconstruction for fat-water separation in multi-coil acquisitions. - Özgür Yilmaz; Emine Ulku Saritas; Tolga Çukur (SIU, 2016)

Digital computation of fractional Fourier and linear canonical transforms and sparse image representation. - Aykut Koç; Haldun M. Özaktas; Burak Bartan; Erhan Gundogdu; Tolga Çukur (APSIPA, 2017)

A synthesis-based approach to compressive multi-contrast magnetic resonance imaging. - Alper Gungor; Emre Kopanoglu; Tolga Çukur; H. Emre Guven (ISBI, 2017)

Image reconstruction for Magnetic Particle Imaging using an Augmented Lagrangian Method. - Serhat Ilbey; Can Baris Top; Tolga Çukur; Emine Ulku Saritas; H. Emre Guven (ISBI, 2017)

Fast recovery of compressed multi-contrast magnetic resonance images. - Alper Güngör; Emre Kopanoglu; Tolga Çukur; H. Emre Güven (Image Processing, 2017)

Category-selective top-down modulation in the fusiform face area of the human brain during visual search. - Salman Ul Hassan Dar; Tolga Çukur (SIU, 2017)

Ruber function based reconstruction in accelerated phase-cycled bSSFP acquisitions for increased detection performance. - Efe Ilicak; Tolga Çukur (SIU, 2017)

Semantic similarity between Turkish and European languages using word embeddings. - Lutfi Kerem Senel; Veysel Yücesoy; Aykut Koç; Tolga Çukur (SIU, 2017)

Measuring cross-lingual semantic similarity across European languages. - Lutfi Kerem Senel; Veysel Yücesoy; Aykut Koç; Tolga Çukur (TSP, 2017)

A Transfer-Learning Approach for Accelerated MRI using Deep Neural Networks. - Salman Ul Hassan Dar; Tolga Çukur (CoRR, 2017)

Sparse representation of two- and three-dimensional images with fractional Fourier, Hartley, linear canonical, and Haar wavelet transforms. - Aykut Koç; Burak Bartan; Erhan Gundogdu; Tolga Çukur; Haldun M. Özaktas (Expert Syst. Appl., 2017)

Elliptical signal model based simultaneous parameter estimation in bSSFP imaging. - Kübra Keskin; Tolga Çukur (SIU, 2018)

Joint partial fourier and compressed sensing reconstruction for accelerated time-of-flight MR angiography. - Toygan Kilic; Tolga Çukur; Oktay Algin; Emine Ulku Saritas (SIU, 2018)

Interpretability analysis for Turkish word embeddings. - Lutfi Kerem Senel; Veysel Yücesoy; Aykut Koç; Tolga Çukur (SIU, 2018)

Generating Semantic Similarity Atlas for Natural Languages. - Lutfi Kerem Senel; Ihsan Utlu; Veysel Yücesoy; Aykut Koç; Tolga Çukur (SLT, 2018)

Image Synthesis in Multi-Contrast MRI with Conditional Generative Adversarial Networks. - Salman Ul Hassan Dar; Mahmut Yurt; Levent Karacan; Aykut Erdem; Erkut Erdem; Tolga Çukur (CoRR, 2018)

Synergistic Reconstruction and Synthesis via Generative Adversarial Networks for Accelerated Multi-Contrast MRI. - Salman Ul Hassan Dar; Mahmut Yurt; Mohammad Shahdloo; Muhammed Emrullah Ildiz; Tolga Çukur (CoRR, 2018)

Semantic Structure and Interpretability of Word Embeddings. - Lutfi Kerem Senel; Ihsan Utlu; Veysel Yücesoy; Aykut Koç; Tolga Çukur (IEEE ACM Trans. Audio Speech Lang. Process., 2018)

Learning-Based Compressive MRI. - Baran Gozcu; Rabeeh Karimi Mahabadi; Yen-Huan Li; Efe Ilicak; Tolga Çukur; Jonathan Scarlett; Volkan Cevher (IEEE Trans. Medical Imaging, 2018)

Topic Change Detection on Dialog Based Text. - Lütfi Kerem Senel; Veysel Yücesoy; Aykut Koç; Tolga Çukur (SIU, 2019)

Scalable Learning-Based Sampling Optimization for Compressive Dynamic MRI. - Thomas Sanchez; Baran Gözcü; Ruud B. van Heeswijk; Efe Ilicak; Tolga Çukur; Volkan Cevher (CoRR, 2019)

mustGAN: Multi-Stream Generative Adversarial Networks for MR Image Synthesis. - Mahmut Yurt; Salman Ul Hassan Dar; Aykut Erdem; Erkut Erdem; Tolga Çukur (CoRR, 2019)

Spatially informed voxelwise modeling for naturalistic fMRI experiments. - Emin Çelik; Salman Ul Hassan Dar; Özgür Yilmaz; Ümit Keles; Tolga Çukur (NeuroImage, 2019)

Fast System Calibration With Coded Calibration Scenes for Magnetic Particle Imaging. - Serhat Ilbey; Can Baris Top; Alper Güngör; Tolga Çukur; Emine Ulku Saritas; H. Emre Güven (IEEE Trans. Medical Imaging, 2019)

Statistically Segregated k-Space Sampling for Accelerating Multiple-Acquisition MRI. - Lutfi Kerem Senel; Toygan Kilic; Alper Gungor; Emre Kopanoglu; H. Emre Guven; Emine Ulku Saritas; Aykut Koç; Tolga Çukur (IEEE Trans. Medical Imaging, 2019)

Projection onto Epigraph Sets for Rapid Self-Tuning Compressed Sensing MRI. - Mohammad Shahdloo; Efe Ilicak; Mohammad Tofighi; Emine Ulku Saritas; A. Enis Çetin; Tolga Çukur (IEEE Trans. Medical Imaging, 2019)

Scalable Learning-Based Sampling Optimization for Compressive Dynamic MRI. - Thomas Sanchez; Baran Gözcü; Ruud B. van Heeswijk; Armin Eftekhari; Efe Ilicak; Tolga Çukur; Volkan Cevher (ICASSP, 2020)

T1-Weighted Contrast-Enhanced Synthesis for Multi-Contrast MRI Segmentation. - Muzaffer Özbey; Tolga Çukur (SIU, 2020)

Semi-Supervised Learning of Mutually Accelerated Multi-Contrast MRI Synthesis without Fully-Sampled Ground-Truths. - Mahmut Yurt; Salman Ul Hassan Dar; Berk Tinaz; Muzaffer Özbey; Tolga Çukur (CoRR, 2020)

Prior-Guided Image Reconstruction for Accelerated Multi-Contrast MRI via Generative Adversarial Networks. - Salman Ul Hassan Dar; Mahmut Yurt; Mohammad Shahdloo; Muhammed Emrullah Ildiz; Berk Tinaz; Tolga Çukur (IEEE J. Sel. Top. Signal Process., 2020)

Biased competition in semantic representation during natural visual search. - Mohammad Shahdloo; Emin Çelik; Tolga Çukur (NeuroImage, 2020)

Deep Learned Super Resolution of System Matrices for Magnetic Particle Imaging. - Alper Güngör; Baris Askin; Damla Alptekin Soydan; Can Baris Top; Tolga Çukur (EMBC, 2021)

Self-supervised Dynamic MRI Reconstruction. - Mert Acar; Tolga Çukur; Ilkay Öksüz (MLMIR@MICCAI, 2021)

Deep MRI Reconstruction with Generative Vision Transformers. - Yilmaz Korkmaz; Mahmut Yurt; Salman Ul Hassan Dar; Muzaffer Özbey; Tolga Çukur (MLMIR@MICCAI, 2021)

A CNN Based Super-Resolution Technique for Magnetic Particle Imaging System Matrix. - Bariis Askin; Alper Güngör; Damla Alptekin Soydan; Can Baris Top; Tolga Çukur (SIU, 2021)

Synergistic Reconstruction-Synthesis of Multi-Contrast MRI using Transfer Learning Method. - Irem Kaftan; Özgür Bora Gevrek; Tolga Çukur (SIU, 2021)

Multi-Image Reconstruction in Multi-Contrast MRI. - Muzaffer Özbey; Tolga Çukur (SIU, 2021)

Three Dimensional MR Image Synthesis with Progressive Generative Adversarial Networks. - Muzaffer Özbey; Mahmut Yurt; Salman Ul Hassan Dar; Tolga Çukur (CoRR, 2021)

A Few-Shot Learning Approach for Accelerated MRI via Fusion of Data-Driven and Subject-Driven Priors. - Salman Ul Hassan Dar; Mahmut Yurt; Tolga Çukur (CoRR, 2021)

ResViT: Residual vision transformers for multi-modal medical image synthesis. - Onat Dalmaz; Mahmut Yurt; Tolga Çukur (CoRR, 2021)

mustGAN: multi-stream Generative Adversarial Networks for MR Image Synthesis. - Mahmut Yurt; Salman Ul Hassan Dar; Aykut Erdem; Erkut Erdem; Kader Karli Oguz; Tolga Çukur (Medical Image Anal., 2021)

Detecting COVID-19 from respiratory sound recordings with transformers. - Idil Aytekin; Onat Dalmaz; Haydar Ankishan; Emine Ulku Saritas; Ulas Bagci; Tolga Çukur; Haydar Celik (Computer-Aided Diagnosis, 2022)

Segmentation-Aware MRI Reconstruction. - Mert Acar; Tolga Çukur; Ilkay Öksüz (MLMIR@MICCAI, 2022)

PP-MPI: A Deep Plug-and-Play Prior for Magnetic Particle Imaging Reconstruction. - Baris Askin; Alper Güngör; Damla Alptekin Soydan; Emine Ulku Saritas; Can Baris Top; Tolga Çukur (MLMIR@MICCAI, 2022)

A Specificity-Preserving Generative Model for Federated MRI Translation. - Onat Dalmaz; Usama Mirza; Gökberk Elmas; Muzaffer Özbey; Salman Ul Hassan Dar; Tolga Çukur (DeCaF/FAIR@MICCAI, 2022)

MRI Reconstruction with Conditional Adversarial Transformers. - Yilmaz Korkmaz; Muzaffer Özbey; Tolga Çukur (MLMIR@MICCAI, 2022)

A Graphical Network Layer for Lagged Analysis of FMRI Data. - Hasan Atakan Bedel; Irmak Sivgin; Tolga Çukur (SIU, 2022)

Multi-Contrast MRI Synthesis with Channel-Exchanging-Network. - Onat Dalmaz; Idil Aytekin; Salman Ul Hassan Dar; Aykut Erdem; Erkut Erdem; Tolga Çukur (SIU, 2022)

Bottleneck Sharing Generative Adversarial Networks for Unified Multi-Contrast MR Image Synthesis. - Onat Dalmaz; Baturay Saglam; Kaan Gönç; Salman Ul Hassan Dar; Tolga Çukur (SIU, 2022)

Skip Connections for Medical Image Synthesis with Generative Adversarial Networks. - Muhammad Usama Mirza; Onat Dalmaz; Tolga Çukur (SIU, 2022)

Improving Image Synthesis Quality in Multi-Contrast MRI Using Transfer Learning via Autoencoders. - Sahan Yoruç Selçuk; Onat Dalmaz; Salman Ul Hassan Dar; Tolga Çukur (SIU, 2022)

Adaptive Diffusion Priors for Accelerated MRI Reconstruction. - Salman Ul Hassan Dar; Saban Öztürk; Yilmaz Korkmaz; Gökberk Elmas; Muzaffer Özbey; Alper Güngör; Tolga Çukur (CoRR, 2022)

One Model to Unite Them All: Personalized Federated Learning of Multi-Contrast MRI Synthesis. - Onat Dalmaz; Muhammad Usama Mirza; Gökberk Elmas; Muzaffer Özbey; Salman Ul Hassan Dar; Emir Ceyani; Salman Avestimehr; Tolga Çukur (CoRR, 2022)

Unsupervised Simplification of Legal Texts. - Mert Cemri; Tolga Çukur; Aykut Koç (CoRR, 2022)

Learning interpretable word embeddings via bidirectional alignment of dimensions with semantic concepts. - Lütfi Kerem Senel; Furkan Sahinuç; Veysel Yücesoy; Hinrich Schütze; Tolga Çukur; Aykut Koç (Inf. Process. Manag., 2022)

Progressively volumetrized deep generative models for data-efficient contextual learning of MR image recovery. - Mahmut Yurt; Muzaffer Özbey; Salman Ul Hassan Dar; Berk Tinaz; Kader Karli Oguz; Tolga Çukur (Medical Image Anal., 2022)

Deep Clustering via Center-Oriented Margin Free-Triplet Loss for Skin Lesion Detection in Highly Imbalanced Datasets. - Saban Öztürk; Tolga Çukur (IEEE J. Biomed. Health Informatics, 2022)

ResViT: Residual Vision Transformers for Multimodal Medical Image Synthesis. - Onat Dalmaz; Mahmut Yurt; Tolga Çukur (IEEE Trans. Medical Imaging, 2022)

TranSMS: Transformers for Super-Resolution Calibration in Magnetic Particle Imaging. - Alper Güngör; Baris Askin; Damla Alptekin Soydan; Emine Ulku Saritas; Can Baris Top; Tolga Çukur (IEEE Trans. Medical Imaging, 2022)

Constrained Ellipse Fitting for Efficient Parameter Mapping With Phase-Cycled bSSFP MRI. - Kübra Keskin; Ugur Yilmaz; Tolga Çukur (IEEE Trans. Medical Imaging, 2022)

Unsupervised MRI Reconstruction via Zero-Shot Learned Adversarial Transformers. - Yilmaz Korkmaz; Salman Ul Hassan Dar; Mahmut Yurt; Muzaffer Özbey; Tolga Çukur (IEEE Trans. Medical Imaging, 2022)

Semi-Supervised Learning of MRI Synthesis Without Fully-Sampled Ground Truths. - Mahmut Yurt; Onat Dalmaz; Salman Ul Hassan Dar; Muzaffer Özbey; Berk Tinaz; Kader Karli Oguz; Tolga Çukur (IEEE Trans. Medical Imaging, 2022)

Deep Learning Reconstruction for Single Pixel Imaging with Generative Adversarial Networks. - Baturalp Güven; Alper Güngör; M. Umut Bahçeci; Tolga Çukur (ICIP, 2023)

User Feedback-based Online Learning for Intent Classification. - Kaan Gönç; Baturay Saglam; Onat Dalmaz; Tolga Çukur; Suleyman Serdar Kozat; Hamdi Dibeklioglu (ICMI, 2023)

Self-supervised MRI Reconstruction with Unrolled Diffusion Models. - Yilmaz Korkmaz; Tolga Çukur; Vishal M. Patel (MICCAI (10), 2023)

Employing Transformer Encoders for Enhanced Functional Connectivity Mapping. - Hasan Atakan Bedel; Tolga Çukur (SIU, 2023)

Denoising Diffusion Adversarial Models for Unconditional Medical Image Generation. - Onat Dalmaz; Baturay Saglam; Gökberk Elmas; Muhammad Usama Mirza; Tolga Çukur (SIU, 2023)

A Diffusion-Based Reconstruction Technique for Single Pixel Camera. - Baturalp Güven; Alper Güngör; M. Umut Bahçeci; Tolga Çukur (SIU, 2023)

Super-Resolution Diffusion Model for Accelerated MRI Reconstruction. - Muhammad Usama Mirza; Tolga Çukur (SIU, 2023)

Focal Modulation Based End-to-End Multi-Label Classification for Chest X-Ray Image Classification. - Saban Öztürk; Tolga Çukur (SIU, 2023)

A Transformer-Based Real-Time Focus Detection Technique for Wide-Field Interferometric Microscopy. - Can Polat; Alper Güngör; Mustafa Yorulmaz; Bilal Kizilelma; Tolga Çukur (SIU, 2023)

FD-Net: An Unsupervised Deep Forward-Distortion Model for Susceptibility Artifact Correction in EPI. - Abdallah Zaid Alkilani; Tolga Çukur; Emine Ulku Saritas (CoRR, 2023)

DreaMR: Diffusion-driven Counterfactual Explanation for Functional MRI. - Hasan Atakan Bedel; Tolga Çukur (CoRR, 2023)

Federated Learning of Generative Image Priors for MRI Reconstruction. - Gökberk Elmas; Salman Ul Hassan Dar; Yilmaz Korkmaz; Emir Ceyani; Burak Susam; Muzaffer Özbey; Salman Avestimehr; Tolga Çukur (IEEE Trans. Medical Imaging, 2023)

Editorial: Machine learning methods for human brain imaging. - Fatos Tünay Yarman Vural; Sharlene D. Newman; Tolga Çukur; Itir Önal Ertugrul (Frontiers Neuroinformatics, 2023)

Content-based medical image retrieval with opponent class adaptive margin loss. - Saban Öztürk; Emin Çelik; Tolga Çukur (Inf. Sci., 2023)

BolT: Fused window transformers for fMRI time series analysis. - Hasan Atakan Bedel; Irmak Sivgin; Onat Dalmaz; Salman Ul Hassan Dar; Tolga Çukur (Medical Image Anal., 2023)

Adaptive diffusion priors for accelerated MRI reconstruction. - Alper Güngör; Salman Ul Hassan Dar; Saban Öztürk; Yilmaz Korkmaz; Hasan Atakan Bedel; Gökberk Elmas; Muzaffer Özbey; Tolga Çukur (Medical Image Anal., 2023)

Focal modulation network for lung segmentation in chest X-ray images. - Saban Öztürk; Tolga Çukur (Turkish J. Electr. Eng. Comput. Sci., 2023)

Parallel-stream fusion of scan-specific and scan-general priors for learning deep MRI reconstruction in low-data regimes. - Salman Ul Hassan Dar; Saban Öztürk; Muzaffer Özbey; Kader Karli Oguz; Tolga Çukur (Comput. Biol. Medicine, 2023)

Unsupervised Medical Image Translation With Adversarial Diffusion Models. - Muzaffer Özbey; Onat Dalmaz; Salman Ul Hassan Dar; Hasan Atakan Bedel; Saban Öztürk; Alper Güngör; Tolga Çukur (IEEE Trans. Medical Imaging, 2023)

Robust Brain Tumor Segmentation with Deep Residual Supervision and Mixed Precision Training. - Fuat Arslan; Melih Berk Yilmaz; Tolga Çukur (SIU, 2024)

Multi-Contrast MR Image Synthesis with a Brownian Diffusion Model. - Bilal Kabas; Fuat Arslan; Valiyeh Ansarian Nezhad; Tolga Çukur (SIU, 2024)

Super Resolution MRI via Upscaling Diffusion Bridges. - Muhammad Usama Mirza; Fuat Arslan; Tolga Çukur (SIU, 2024)

Generalizable Deep MRI Reconstruction with Cross-Site Data Synthesis. - Valiyeh Ansarian Nezhad; Gökberk Elmas; Fuat Arslan; Bilal Kabas; Tolga Çukur (SIU, 2024)

I2I-Mamba: Multi-modal medical image synthesis via selective state space modeling. - Omer F. Atli; Bilal Kabas; Fuat Arslan; Mahmut Yurt; Onat Dalmaz; Tolga Çukur (CoRR, 2024)

Bayesian Conditioned Diffusion Models for Inverse Problems. - Alper Güngör; Bahri Batuhan Bilecen; Tolga Çukur (CoRR, 2024)

DenoMamba: A fused state-space model for low-dose CT denoising. - Saban Öztürk; Oguz Can Duran; Tolga Çukur (CoRR, 2024)

Physics-Driven Autoregressive State Space Models for Medical Image Reconstruction. - Bilal Kabas; Fuat Arslan; Valiyeh Ansarian Nezhad; Saban Öztürk; Emine Ulku Saritas; Tolga Çukur (CoRR, 2024)

One model to unite them all: Personalized federated learning of multi-contrast MRI synthesis. - Onat Dalmaz; Muhammad Usama Mirza; Gökberk Elmas; Muzaffer Özbey; Salman Ul Hassan Dar; Emir Ceyani; Kader Karli Oguz; Salman Avestimehr; Tolga Çukur (Medical Image Anal., 2024)

CalibFPA: A Focal Plane Array Imaging System Based on Online Deep-Learning Calibration. - Alper Güngör; M. Umut Bahçeci; Yasin Ergen; Ahmet Sözak; O. Oner Ekiz; Tolga Yelboga; Tolga Çukur (IEEE Trans. Computational Imaging, 2024)

DEQ-MPI: A Deep Equilibrium Reconstruction With Learned Consistency for Magnetic Particle Imaging. - Alper Güngör; Baris Askin; Damla Alptekin Soydan; Can Baris Top; Emine Ulku Saritas; Tolga Çukur (IEEE Trans. Medical Imaging, 2024)

COVID-19 Detection From Respiratory Sounds With Hierarchical Spectrogram Transformers. - Idil Aytekin; Onat Dalmaz; Kaan Gonc; Haydar Ankishan; Emine Ulku Saritas; Ulas Bagci; Haydar Celik; Tolga Çukur (IEEE J. Biomed. Health Informatics, 2024)

A Plug-In Graph Neural Network to Boost Temporal Sensitivity in fMRI Analysis. - Irmak Sivgin; Hasan Atakan Bedel; Saban Öztürk; Tolga Çukur (IEEE J. Biomed. Health Informatics, 2024)

Editorial. - Dong Liang 001; Daniel Rueckert; Ge Wang 001; Tolga Çukur; Hengyong Yu (IEEE Trans. Medical Imaging, 2024)

HydraViT: Adaptive multi-branch transformer for multi-label disease classification from Chest X-ray images. - Saban Öztürk; Mehmet Yigit Turali; Tolga Çukur (Biomed. Signal Process. Control., 2025)

Self-consistent recursive diffusion bridge for medical image translation. - Fuat Arslan; Bilal Kabas; Onat Dalmaz; Muzaffer Özbey; Tolga Çukur (Medical Image Anal., 2025)

scGraPhT: Merging Transformers and Graph Neural Networks for Single-Cell Annotation. - Emirhan Koç; Emre Kulkul; Gülara Kaynar; Tolga Çukur; Murat Acar; Aykut Koç (IEEE Trans. Signal Inf. Process. over Networks, 2025)

Generative Autoregressive Transformers for Model-Agnostic Federated MRI Reconstruction. - Valiyeh Ansarian Nezhad; Gökberk Elmas; Bilal Kabas; Fuat Arslan; Tolga Çukur (CoRR, 2025)

Meta-Entity Driven Triplet Mining for Aligning Medical Vision-Language Models. - Saban Öztürk; Melih Berk Yilmaz; Muti Kara; M. Talat Yavuz; Aykut Koç; Tolga Çukur (CoRR, 2025)

Efficient Noise Calculation in Deep Learning-based MRI Reconstructions. - Onat Dalmaz; Arjun D. Desai; Reinhard Heckel; Tolga Çukur; Akshay S. Chaudhari; Brian A. Hargreaves (CoRR, 2025)