Thomas S. Brettin
Orcid: 0000-0001-9301-9760
According to our database1,
Thomas S. Brettin
authored at least 40 papers
between 2001 and 2023.
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Bibliography
2023
Int. J. High Perform. Comput. Appl., November, 2023
Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR.
Nucleic Acids Res., January, 2023
DeepSpeed4Science Initiative: Enabling Large-Scale Scientific Discovery through Sophisticated AI System Technologies.
CoRR, 2023
Proceedings of the SC '23 Workshops of The International Conference on High Performance Computing, 2023
Entropy-Based Regularization on Deep Learning Models for Anti-Cancer Drug Response Prediction.
Proceedings of the SC '23 Workshops of The International Conference on High Performance Computing, 2023
An Automation Framework for Comparison of Cancer Response Models Across Configurations.
Proceedings of the 19th IEEE International Conference on e-Science, 2023
2022
High-Throughput Virtual Screening and Validation of a SARS-CoV-2 Main Protease Noncovalent Inhibitor.
J. Chem. Inf. Model., 2022
Deep learning methods for drug response prediction in cancer: predominant and emerging trends.
CoRR, 2022
Briefings Bioinform., 2022
Proceedings of the Tenth International Conference on Learning Representations, 2022
2021
CrossedWires: A Dataset of Syntactically Equivalent but Semantically Disparate Deep Learning Models.
CoRR, 2021
Protein-Ligand Docking Surrogate Models: A SARS-CoV-2 Benchmark for Deep Learning Accelerated Virtual Screening.
CoRR, 2021
Pandemic Drugs at Pandemic Speed: Accelerating COVID-19 Drug Discovery with Hybrid Machine Learning- and Physics-based Simulations on High Performance Computers.
CoRR, 2021
BMC Bioinform., 2021
A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes.
Briefings Bioinform., 2021
Proceedings of the ICPP 2021: 50th International Conference on Parallel Processing, Lemont, IL, USA, August 9, 2021
2020
Nucleic Acids Res., 2020
CoRR, 2020
CoRR, 2020
CoRR, 2020
A Systematic Approach to Featurization for Cancer Drug Sensitivity Predictions with Deep Learning.
CoRR, 2020
High-bypass Learning: Automated Detection of Tumor Cells That Significantly Impact Drug Response.
Proceedings of the 6th IEEE/ACM Workshop on Machine Learning in High Performance Computing Environments, 2020
2019
Briefings Bioinform., 2019
Scalable reinforcement-learning-based neural architecture search for cancer deep learning research.
Proceedings of the International Conference for High Performance Computing, 2019
Performance, Energy, and Scalability Analysis and Improvement of Parallel Cancer Deep Learning CANDLE Benchmarks.
Proceedings of the 48th International Conference on Parallel Processing, 2019
2018
BMC Bioinform., 2018
CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research.
BMC Bioinform., 2018
Portable and Reusable Deep Learning Infrastructure with Containers to Accelerate Cancer Studies.
Proceedings of the 4th International Workshop on Extreme Scale Programming Models and Middleware, 2018
2017
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.
Nucleic Acids Res., 2017
Leveraging Large-Scale Computing for Population Information Integration, Analysis, and Modeling.
Proceedings of the AMIA 2017, 2017
2015
PLoS Comput. Biol., 2015
2012
RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics.
Nucleic Acids Res., 2012
2011
Scenario driven data modelling: a method for integrating diverse sources of data and data streams.
BMC Bioinform., 2011
Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis, 2011
2010
Next generation models for storage and representation of microbial biological annotation.
BMC Bioinform., 2010
2008
Streptococcus in Toto: A Species-specific Comparative Analysis Website Prototype.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008
2007
A novel approach to high throughput microbial genome finishing: Incorporation of 454 sequence data for gap closure in low quality Sanger data.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007
2005
BioFilter: An Architecture for Parallel Deployment and Dynamic Chaining of Standalone Bioinformatics Tools.
Proceedings of the 19th International Parallel and Distributed Processing Symposium (IPDPS 2005), 2005
2001