Comparing Cryo-EM Reconstructions and Validating Atomic Model Fit Using Difference Maps. - Agnel Praveen Joseph; Ingvar C. Lagerstedt; Arjen Jakobi; Tom Burnley; Ardan Patwardhan; Maya Topf; Martyn Winn (J. Chem. Inf. Model., 2020)

Affinity-VAE for disentanglement, clustering and classification of objects in multidimensional image data. - Jola Mirecka; Marjan Famili; Anna Kotanska; Nikolai Juraschko; Beatriz Costa-Gomes; Colin M. Palmer; Jeyan Thiyagalingam; Tom Burnley; Mark Basham; Alan R. Lowe (CoRR, 2022)

Intelligent resolution: Integrating Cryo-EM with AI-driven multi-resolution simulations to observe the severe acute respiratory syndrome coronavirus-2 replication-transcription machinery in action. - Anda Trifan; Defne Gorgun; Michael Salim; Zongyi Li; Alexander Brace; Maxim Zvyagin; Heng Ma; Austin Clyde; David Clark; David J. Hardy; Tom Burnley; Lei Huang 019; et al. (Int. J. High Perform. Comput. Appl., 2022)

Affinity-VAE: Incorporating Prior Knowledge in Representation Learning from Scientific Images. - Marjan Famili; Jola Mirecka; Camila Rangel Smith; Anna Kostanska; Nikolai Juraschko; Beatriz Costa-Gomes; Colin M. Palmer; Jeyan Thiyagalingam; Tom Burnley; Mark Basham; Alan R. Lowe (ECCV Workshops (16), 2024)

PERC: a suite of software tools for the curation of cryoEM data with application to simulation, modelling and machine learning. - Beatriz Costa-Gomes; Joel Greer; Nikolai Juraschko; James Parkhurst; Jola Mirecka; Marjan Famili; Camila Rangel Smith; Oliver Strickson; Alan R. Lowe; Mark Basham; Tom Burnley (CoRR, 2025)