Multi-scale Geometric Modeling of Ambiguous Shapes with : oleranced Balls and Compoundly Weighted alpha-shapes. - Frédéric Cazals; Tom Dreyfus (Comput. Graph. Forum, 2010)

Modélisation Multi-échelle et Analyse d'Assemblages Macro-moléculaires Ambigus, avec Applications au Complexe du Pore Nucléaire. (Multi-scale Modeling and Analysis of Ambiguous Macro-molecular Assemblies, with Applications to the Nuclear Pore Complex). - Tom Dreyfus (2011)

Greedy Geometric Algorithms for Collection of Balls, with Applications to Geometric Approximation and Molecular Coarse-Graining. - Frédéric Cazals; Tom Dreyfus; Sushant Sachdeva; N. Shah (Comput. Graph. Forum, 2014)

Conformational ensembles and sampled energy landscapes: Analysis and comparison. - Frédéric Cazals; Tom Dreyfus; Dorian Mazauric; Christine-Andrea Roth; Charles H. Robert (J. Comput. Chem., 2015)

Hybridizing rapidly exploring random trees and basin hopping yields an improved exploration of energy landscapes. - Christine-Andrea Roth; Tom Dreyfus; Charles H. Robert; Frédéric Cazals (J. Comput. Chem., 2016)

The structural bioinformatics library: modeling in biomolecular science and beyond. - Frédéric Cazals; Tom Dreyfus (Bioinform., 2017)