Cophylogenetic Reconciliation with ILP. - Nicolas Wieseke; Tom Hartmann; Matthias Bernt; Martin Middendorf (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Population based ant colony optimization for reconstructing ECG signals. - Yih-Chun Cheng; Tom Hartmann; Pei-Yun Tsai 001; Martin Middendorf (Evol. Intell., 2016)

EqualTDRL: illustrating equivalent tandem duplication random loss rearrangements. - Tom Hartmann; Matthias Bernt; Martin Middendorf (BMC Bioinform., 2018)

Combinatorics of Tandem Duplication Random Loss Mutations on Circular Genomes. - Tom Hartmann; An-Chiang Chu; Martin Middendorf; Matthias Bernt (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Genome Rearrangement with ILP. - Tom Hartmann; Nicolas Wieseke; Roded Sharan; Martin Middendorf; Matthias Bernt (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Models and Algorithms for Sorting Permutations with Tandem Duplication and Random Loss - Tom Hartmann (2018)

An Exact Algorithm for Sorting by Weighted Preserving Genome Rearrangements. - Tom Hartmann; Matthias Bernt; Martin Middendorf (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

A weighted population update rule for PACO applied to the single machine total weighted tardiness problem. - Daniel Abitz; Tom Hartmann; Martin Middendorf (GECCO, 2020)

Economic Genome Assembly from Low Coverage Illumina and Nanopore Data. - Thomas Gatter; Sarah von Löhneysen; Polina Drozdova; Tom Hartmann; Peter F. Stadler (WABI, 2020)

LazyB: fast and cheap genome assembly. - Thomas Gatter; Sarah von Löhneysen; Jörg Fallmann; Polina Drozdova; Tom Hartmann; Peter F. Stadler (Algorithms Mol. Biol., 2021)

Sorting Signed Permutations by Inverse Tandem Duplication Random Losses. - Tom Hartmann; Max Bannach; Martin Middendorf (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Complete edge-colored permutation graphs. - Tom Hartmann; Max Bannach; Martin Middendorf; Peter F. Stadler; Nicolas Wieseke; Marc Hellmuth (Adv. Appl. Math., 2022)

On permutation schedules for two-machine flow shops with buffer constraints and constant processing times on one machine. - Philine Geser; Hoang Thanh Le 002; Tom Hartmann; Martin Middendorf (Eur. J. Oper. Res., 2022)

Relative timing information and orthology in evolutionary scenarios. - David Schaller 001; Tom Hartmann; Manuel Lafond; Peter F. Stadler; Nicolas Wieseke; Marc Hellmuth (Algorithms Mol. Biol., 2023)

Sorting signed permutations by tandem duplication random loss and inverse tandem duplication random loss. - Bruno J. Schmidt; Tom Hartmann; Peter F. Stadler (Adv. Appl. Math., 2024)