Building a Genetic Programming Framework: The Added-Value of Design Patterns. - Tom Lenaerts; Bernard Manderick (EuroGP, 1998)

Transitions in a Simple Evolutionary Model. - Tom Lenaerts; Anne Defaweux; P. Beyens; Bernard Manderick (ECAL, 2001)

Raising the Dead: Extending Evolutionary Algorithms with a Case-Based Memory. - Jeroen Eggermont; Tom Lenaerts; Sanna Pöyhönen; Alexandre Termier (EuroGP, 2001)

Lineage and Induction in the Development of Evolved Genotypes for Non-uniform 2D CAs. - Piet van Remortel; Tom Lenaerts; Bernard Manderick (Australian Joint Conference on Artificial Intelligence, 2002)

Learning to Reach the Pareto Optimal Nash Equilibrium as a Team. - Katja Verbeeck; Ann Nowé; Tom Lenaerts; Johan Parent (Australian Joint Conference on Artificial Intelligence, 2002)

The Robustness of Small Developped SBlock Circuits Using Different Clocking Schemes. - Piet van Remortel; Tom Lenaerts; Bernard Manderick (Evolvable Hardware, 2002)

An Individual-based Approach To Multi-level Selection. - Tom Lenaerts; Anne Defaweux; Piet van Remortel; Bernard Manderick (GECCO, 2002)

Evaluation of a Simple Multi-Level Selection Model. - Tom Lenaerts; Anne Defaweux; Piet van Remortel; Bernard Manderick (GECCO Late Breaking Papers, 2002)

A selection-mutation model for q-learning in multi-agent systems. - Karl Tuyls; Katja Verbeeck; Tom Lenaerts (AAMAS, 2003)

Developmental Effects on Tuneable Fitness Landscapes. - Piet van Remortel; Johan Ceuppens; Anne Defaweux; Tom Lenaerts; Bernard Manderick (ICES, 2003)

Gene Interaction and Modularisation in a Model for Gene-Regulated Development. - Piet van Remortel; Bernard Manderick; Tom Lenaerts (Evolvable Hardware, 2004)

An Evolutionary Game Theoretic Perspective on Learning in Multi-Agent Systems. - Karl Tuyls; Ann Nowé; Tom Lenaerts; Bernard Manderick (Synth., 2004)

Complexity transitions in evolutionary algorithms: evaluating the impact of the initial population. - Anne Defaweux; Tom Lenaerts; Jano I. van Hemert; Johan Parent (Congress on Evolutionary Computation, 2005)

Growing Biochemical Networks: Identifying the Intrinsic Properties. - Hugues Bersini; Tom Lenaerts; Francisco C. Santos (ECAL, 2005)

Evolutionary Transitions as a Metaphor for Evolutionary Optimisation. - Anne Defaweux; Tom Lenaerts; Jano I. van Hemert (ECAL, 2005)

Transition models as an incremental approach for problem solving in evolutionary algorithms. - Anne Defaweux; Tom Lenaerts; Jano I. van Hemert; Johan Parent (GECCO, 2005)

Evolution of DNA Uptake Signal Sequences. - Dominique F. Chu; Hoong-Chien Lee; Tom Lenaerts (Artif. Life, 2005)

Dynamical Hierarchies. - Tom Lenaerts; Dominique F. Chu; Richard Watson 005 (Artif. Life, 2005)

Cooperation Prevails When Individuals Adjust Their Social Ties. - Francisco C. Santos; Jorge M. Pacheco; Tom Lenaerts (PLoS Comput. Biol., 2006)

Evolution of Cooperation in a Population of Selfish Adaptive Agents. - Jorge M. Pacheco; Tom Lenaerts; Francisco C. Santos (ECAL, 2007)

Networks Regulating Networks: The Effects of Constraints on Topological Evolution. - Francisco C. Santos; Hugues Bersini; Tom Lenaerts (ECAL, 2007)

Evolution of Complexity. - Carlos Gershenson; Tom Lenaerts (Artif. Life, 2008)

Reconstruction of Protein Backbones from the BriX Collection of Canonical Protein Fragments. - Lies Baeten; Joke Reumers; Vicente Tur; François Stricher; Tom Lenaerts; Luis Serrano; Frederic Rousseau 001; Joost Schymkowitz (PLoS Comput. Biol., 2008)

The coevolution of loyalty and cooperation. - Sven Van Segbroeck; Francisco C. Santos; Ann Nowé; Jorge M. Pacheco; Tom Lenaerts (IEEE Congress on Evolutionary Computation, 2009)

Emergence of Cooperation in Adaptive Social Networks with Behavioral Diversity. - Sven Van Segbroeck; Francisco C. Santos; Tom Lenaerts; Jorge M. Pacheco (ECAL (1), 2009)

A Synthon Approach to Artificial Chemistry. - Tom Lenaerts; Hugues Bersini (Artif. Life, 2009)

Stochastic Simulation of the Chemoton. - Sven Van Segbroeck; Ann Nowé; Tom Lenaerts (Artif. Life, 2009)

Information theoretical quantification of cooperativity in signalling complexes. - Tom Lenaerts; Jesper Ferkinghoff-Borg; Joost Schymkowitz; Frederic Rousseau 001 (BMC Syst. Biol., 2009)

Solving Hierarchically Decomposable Problems with the Evolutionary Transition Algorithm. - Tom Lenaerts; Anne Defaweux (Natural Intelligence for Scheduling, Planning and Packing Problems, 2009)

The Evolutionary Transition Algorithm: Evolving Complex Solutions Out of Simpler Ones. - Tom Lenaerts; Anne Defaweux; Jano I. van Hemert (Nature-Inspired Algorithms for Optimisation, 2009)

Learning to coordinate in complex networks. - Sven Van Segbroeck; Steven de Jong; Ann Nowé; Francisco C. Santos; Tom Lenaerts (Adapt. Behav., 2010)

Coevolution of Cooperation, Response to Adverse Social Ties and Network Structure. - Sven Van Segbroeck; Francisco C. Santos; Jorge M. Pacheco; Tom Lenaerts (Games, 2010)

Dynamics of Mutant Cells in Hierarchical Organized Tissues. - Benjamin Werner; David Dingli; Tom Lenaerts; Jorge M. Pacheco; Arne Traulsen (PLoS Comput. Biol., 2011)

Predicting virus mutations through relational learning. - Elisa Cilia; Stefano Teso; Sergio Ammendola; Tom Lenaerts; Andrea Passerini (AIMM, 2012)

Accurate Prediction of the Dynamical Changes within the Second PDZ Domain of PTP1e. - Elisa Cilia; Geerten W. Vuister; Tom Lenaerts (PLoS Comput. Biol., 2012)

Why Is It So Hard to Say Sorry? Evolution of Apology with Commitments in the iterated Prisoner's Dilemma. - The Anh Han; Luís Moniz Pereira; Francisco C. Santos; Tom Lenaerts (IJCAI, 2013)

Evolution of Common-Pool Resources and Social Welfare in Structured Populations. - Jean-Sébastien Lerat; The Anh Han; Tom Lenaerts (IJCAI, 2013)

Politics Matters: Dynamics of Inter-organizational Networks among Immigrant Associations. - Matteo Gagliolo; Tom Lenaerts; Dirk Jacobs (CompleNet, 2014)

Special Issue for the 20th Anniversary of the European Conference on Artificial Life (ECAL 2011). - Tom Lenaerts; Mario Giacobini; Hugues Bersini; Paul Bourgine; Marco Dorigo; René Doursat (Artif. Life, 2014)

Predicting virus mutations through statistical relational learning. - Elisa Cilia; Stefano Teso; Sergio Ammendola; Tom Lenaerts; Andrea Passerini (BMC Bioinform., 2014)

The DynaMine webserver: predicting protein dynamics from sequence. - Elisa Cilia; Rita Pancsa; Peter Tompa; Tom Lenaerts; Wim F. Vranken (Nucleic Acids Res., 2014)

The Efficient Interaction of Costly Punishment and Commitment. - The Anh Han; Tom Lenaerts (AAMAS, 2015)

Multi-pheromone ant Colony Optimization for Socio-cognitive Simulation Purposes. - Mateusz Sekara; Michal Kowalski; Aleksander Byrski; Bipin Indurkhya; Marek Kisiel-Dorohinicki; Dana Samson; Tom Lenaerts (ICCS, 2015)

Emergence of cooperation via intention recognition, commitment and apology - A research summary. - The Anh Han; Luís Moniz Pereira; Francisco C. Santos; Tom Lenaerts (AI Commun., 2015)

Emergence of Cooperation in Group Interactions: Avoidance vs. Restriction. - The Anh Han; Luís Moniz Pereira; Tom Lenaerts (AAAI Spring Symposia, 2016)

Conditions for the Evolution of Apology and Forgiveness in Populations of Autonomous Agents. - Tom Lenaerts; Luis A. Martinez-Vaquero; The Anh Han; Luís Moniz Pereira (AAAI Spring Symposia, 2016)

Guilt for Non-Humans. - Luís Moniz Pereira; The Anh Han; Luis A. Martinez-Vaquero; Tom Lenaerts (AAAI Spring Symposia, 2016)

Measuring Diversity of Socio-Cognitively Inspired ACO Search. - Ewelina Swiderska; Jakub Lasisz; Aleksander Byrski; Tom Lenaerts; Dana Samson; Bipin Indurkhya; Ann Nowé; Marek Kisiel-Dorohinicki (EvoApplications (1), 2016)

Enhancing Particle Swarm Optimization with Socio-cognitive Inspirations. - Iwan Bugajski; Piotr Listkiewicz; Aleksander Byrski; Marek Kisiel-Dorohinicki; Wojciech Korczynski; Tom Lenaerts; Dana Samson; Bipin Indurkhya; Ann Nowé (ICCS, 2016)

A synergy of costly punishment and commitment in cooperation dilemmas. - The Anh Han; Tom Lenaerts (Adapt. Behav., 2016)

Multilevel biological characterization of exomic variants at the protein level significantly improves the identification of their deleterious effects. - Daniele Raimondi; Andrea M. Gazzo; Marianne Rooman; Tom Lenaerts; Wim F. Vranken (Bioinform., 2016)

NAR Breakthrough Article: DIDA: A curated and annotated digenic diseases database. - Andrea M. Gazzo; Dorien Daneels; Elisa Cilia; Maryse Bonduelle; Marc Abramowicz; Sonia Van Dooren; Guillaume Smits; Tom Lenaerts (Nucleic Acids Res., 2016)

From Binding-Induced Dynamic Effects in SH3 Structures to Evolutionary Conserved Sectors. - Ana Zafra Ruano; Elisa Cilia; José R. Couceiro; Javier Ruiz Sanz; Joost Schymkowitz; Frederic Rousseau 001; Irene Luque; Tom Lenaerts (PLoS Comput. Biol., 2016)

Reactive Versus Anticipative Decision Making in a Novel Gift-Giving Game. - Elias Fernández Domingos; Juan-Carlos Burguillo; Tom Lenaerts (AAAI, 2017)

Coordinating Human and Agent Behavior in Collective-Risk Scenarios. - Elias Fernández Domingos; Juan-Carlos Burguillo; Ann Nowé; Tom Lenaerts (AAAI, 2017)

Centralized versus Personalized Commitments and Their Influence on Cooperation in Group Interactions. - The Anh Han; Luís Moniz Pereira; Luis A. Martinez-Vaquero; Tom Lenaerts (AAAI, 2017)

Commitment and Participation in Public Goods Games. - The Anh Han; Luís Moniz Pereira; Tom Lenaerts (AAMAS, 2017)

Social Manifestation of Guilt Leads to Stable Cooperation in Multi-Agent Systems. - Luís Moniz Pereira; Tom Lenaerts; Luis A. Martinez-Vaquero; The Anh Han (AAMAS, 2017)

Evolution of commitment and level of participation in public goods games. - The Anh Han; Luís Moniz Pereira; Tom Lenaerts (Auton. Agents Multi Agent Syst., 2017)

SVM-dependent pairwise HMM: an application to protein pairwise alignments. - Gabriele Orlando; Daniele Raimondi; Taushif Khan; Tom Lenaerts; Wim F. Vranken (Bioinform., 2017)

Socio-cognitively inspired ant colony optimization. - Aleksander Byrski; Ewelina Swiderska; Jakub Lasisz; Marek Kisiel-Dorohinicki; Tom Lenaerts; Dana Samson; Bipin Indurkhya; Ann Nowé (J. Comput. Sci., 2017)

DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins. - Daniele Raimondi; Ibrahim Tanyalcin; Julien Ferté; Andrea M. Gazzo; Gabriele Orlando; Tom Lenaerts; Marianne Rooman; Wim F. Vranken (Nucleic Acids Res., 2017)

Emergence of Population Structure in Socio-cognitively Inspired Ant Colony Optimization. - Aleksander Byrski; Ewelina Swiderska; Jakub Lasisz; Marek Kisiel-Dorohinicki; Tom Lenaerts; Dana Samson; Bipin Indurkhya (Comput. Sci., 2018)

Evolutionary dynamics of paroxysmal nocturnal hemoglobinuria. - Nathaniel Mon Père; Tom Lenaerts; Jorge M. Pacheco; David Dingli (PLoS Comput. Biol., 2018)

Flexible asynchronous simulation of iterated prisoner's dilemma based on actor model. - Grazyna Skiba; Mateusz Starzec; Aleksander Byrski; Katarzyna Rycerz; Marek Kisiel-Dorohinicki; Wojciech Turek; Daniel Krzywicki; Tom Lenaerts; Juan C. Burguillo (Simul. Model. Pract. Theory, 2018)

Modelling and Influencing the AI Bidding War: A Research Agenda. - The Anh Han; Luís Moniz Pereira; Tom Lenaerts (AIES, 2019)

Towards a Phylogenetic Measure to Quantify HIV Incidence. - Pieter Libin; Nassim Versbraegen; Ana B. Abecasis; Perpetua Gomes; Tom Lenaerts; Ann Nowé (BNAIC/BENELEARN, 2019)

Dynamic Weights in Multi-Objective Deep Reinforcement Learning. - Axel Abels; Diederik M. Roijers; Tom Lenaerts; Ann Nowé; Denis Steckelmacher (ICML, 2019)

Using game theory and decision decomposition to effectively discern and characterise bi-locus diseases. - Nassim Versbraegen; Aziz Fouché; Charlotte Nachtegael; Sofia Papadimitriou; Andrea M. Gazzo; Guillaume Smits; Tom Lenaerts (Artif. Intell. Medicine, 2019)

Modelling the Safety and Surveillance of the AI Race. - The Anh Han; Luís Moniz Pereira; Francisco C. Santos; Tom Lenaerts (CoRR, 2019)

ORVAL: a novel platform for the prediction and exploration of disease-causing oligogenic variant combinations. - Alexandre Renaux; Sofia Papadimitriou; Nassim Versbraegen; Charlotte Nachtegael; Simon Boutry; Ann Nowé; Guillaume Smits; Tom Lenaerts (Nucleic Acids Res., 2019)

Towards Large-Scale Optimization of Iterated Prisoner Dilemma Strategies. - Grazyna Starzec; Mateusz Starzec; Aleksander Byrski; Marek Kisiel-Dorohinicki; Juan C. Burguillo; Tom Lenaerts (Trans. Comput. Collect. Intell., 2019)

Collective Decision-Making as a Contextual Multi-armed Bandit Problem. - Axel Abels; Tom Lenaerts; Vito Trianni; Ann Nowé (ICCCI, 2020)

How Expert Confidence Can Improve Collective Decision-Making in Contextual Multi-Armed Bandit Problems. - Axel Abels; Tom Lenaerts; Vito Trianni; Ann Nowé (ICCCI, 2020)

Timing uncertainty in collective risk dilemmas encourages group reciprocation and polarization. - Elias Fernández Domingos; Jelena Grujic; Juan C. Burguillo; Georg Kirchsteiger; Francisco C. Santos; Tom Lenaerts (CoRR, 2020)

Mediating Artificial Intelligence Developments through Negative and Positive Incentives. - The Anh Han; Luís Moniz Pereira; Tom Lenaerts; Francisco C. Santos (CoRR, 2020)

AI Development Race Can Be Mediated on Heterogeneous Networks. - Theodor Cimpeanu; Francisco C. Santos; Luís Moniz Pereira; Tom Lenaerts; The Anh Han (CoRR, 2020)

To Regulate or Not: A Social Dynamics Analysis of an Idealised AI Race. - The Anh Han; Luís Moniz Pereira; Francisco C. Santos; Tom Lenaerts (J. Artif. Intell. Res., 2020)

Modeling behavioral experiments on uncertainty and cooperation with population-based reinforcement learning - Extended Abstract. - Elias Fernández Domingos; Jelena Grujic; Juan C. Burguillo; Francisco C. Santos; Tom Lenaerts (ALIFE, 2021)

A Regulation Dilemma in Artificial Intelligence Development. - The Anh Han; Francisco C. Santos; Luís Moniz Pereira; Tom Lenaerts (ALIFE, 2021)

Delegation to autonomous agents promotes cooperation in collective-risk dilemmas. - Elias Fernández Domingos; Inês Terrucha; Rémi Suchon; Jelena Grujic; Juan C. Burguillo; Francisco C. Santos; Tom Lenaerts (CoRR, 2021)

Voluntary safety commitments provide an escape from over-regulation in AI development. - The Anh Han; Tom Lenaerts; Francisco C. Santos; Luís Moniz Pereira (CoRR, 2021)

Repeated Interaction and Its Impact on Cooperation and Surplus Allocation - An Experimental Analysis. - Sibilla Di Guida; The Anh Han; Georg Kirchsteiger; Tom Lenaerts; Ioannis Zisis (Games, 2021)

Modeling behavioral experiments on uncertainty and cooperation with population-based reinforcement learning. - Elias Fernández Domingos; Jelena Grujic; Juan C. Burguillo; Francisco C. Santos; Tom Lenaerts (Simul. Model. Pract. Theory, 2021)

Scaling up oligogenic diseases research with OLIDA: the Oligogenic Diseases Database. - Charlotte Nachtegael; Barbara Gravel; Arnau Dillen; Guillaume Smits; Ann Nowé; Sofia Papadimitriou; Tom Lenaerts (Database J. Biol. Databases Curation, 2022)

Inferring Strategies from Observations in Long Iterated Prisoner's Dilemma Experiments. - Eladio Montero-Porras; Jelena Grujic; Elias Fernández Domingos; Tom Lenaerts (CoRR, 2022)

The art of compensation: how hybrid teams solve collective risk dilemmas. - Inês Terrucha; Elias Fernández Domingos; Francisco C. Santos; Pieter Simoens; Tom Lenaerts (CoRR, 2022)

BOCK: Biological networks and Oligogenic Combinations as a Knowledge graph. - Alexandre Renaux; Ann Nowé; Tom Lenaerts (Zenodo, 2022)

BOCK: Biological networks and Oligogenic Combinations as a Knowledge graph. - Alexandre Renaux; Ann Nowé; Tom Lenaerts (Zenodo, 2022)

Laser Learning Environment: A New Environment for Coordination-Critical Multi-agent Tasks. - Yannick Molinghen; Raphaël Avalos; Mark Van Achter; Ann Nowé; Tom Lenaerts (BNAIC/BENELEARN, 2023)

ALAMBIC : Active Learning Automation Methods to Battle Inefficient Curation. - Charlotte Nachtegael; Jacopo De Stefani; Tom Lenaerts (EACL (System Demonstrations), 2023)

ACROCPoLis: A Descriptive Framework for Making Sense of Fairness. - Andrea Aler Tubella; Dimitri Coelho Mollo; Adam Dahlgren Lindström; Hannah Devinney; Virginia Dignum; Petter Ericson; Anna Jonsson 001; Timotheus Kampik; Tom Lenaerts; Julian Alfredo Mendez; Juan Carlos Nieves (FAccT, 2023)

Expertise Trees Resolve Knowledge Limitations in Collective Decision-Making. - Axel Abels; Tom Lenaerts; Vito Trianni; Ann Nowé (ICML, 2023)

Excalibur: A new ensemble method based on an optimal combination of aggregation tests for rare-variant association testing for sequencing data. - Simon Boutry; Raphaël Helaers; Tom Lenaerts; Miikka Vikkula (PLoS Comput. Biol., 2023)

Dealing with expert bias in collective decision-making. - Axel Abels; Tom Lenaerts; Vito Trianni; Ann Nowé (Artif. Intell., 2023)

Rare variant association on unrelated individuals in case-control studies using aggregation tests: existing methods and current limitations. - Simon Boutry; Raphaël Helaers; Tom Lenaerts; Miikka Vikkula (Briefings Bioinform., 2023)

A knowledge graph approach to predict and interpret disease-causing gene interactions. - Alexandre Renaux; Chloé Terwagne; Michael Cochez; Ilaria Tiddi; Ann Nowé; Tom Lenaerts (BMC Bioinform., 2023)

Faster and more accurate pathogenic combination predictions with VarCoPP2.0. - Nassim Versbraegen; Barbara Gravel; Charlotte Nachtegael; Alexandre Renaux; Emma Verkinderen; Ann Nowé; Tom Lenaerts; Sofia Papadimitriou (BMC Bioinform., 2023)

To Promote Full Cooperation in Social Dilemmas, Agents Need to Unlearn Loyalty. - Chin-wing Leung; Tom Lenaerts; Paolo Turrini (IJCAI, 2024)

Defaults: a double-edged sword in governing common resources. - Eladio Montero-Porras; Rémi Suchon; Tom Lenaerts; Elias Fernández Domingos (CoRR, 2024)

Mitigating Biases in Collective Decision-Making: Enhancing Performance in the Face of Fake News. - Axel Abels; Elias Fernández Domingos; Ann Nowé; Tom Lenaerts (CoRR, 2024)

DUVEL: an active-learning annotated biomedical corpus for the recognition of oligogenic combinations. - Charlotte Nachtegael; Jacopo De Stefani; Anthony Cnudde; Tom Lenaerts (Database J. Biol. Databases Curation, 2024)

Toward a Solid Acceptance of the Decentralized Web of Personal Data: Societal and Technological Convergence. - Ana Pop Stefanija; Bart Buelens; Elfi Goesaert; Tom Lenaerts; Jo Pierson; Jan Van den Bussche (Commun. ACM, 2024)

BOCK: Biological networks and Oligogenic Combinations as a Knowledge graph 2.0. - Alexandre Renaux; Inas Bosch; Tom Lenaerts; Ann Nowé (Zenodo, 2024)

BOCK: Biological networks and Oligogenic Combinations as a Knowledge graph. - Alexandre Renaux; Ann Nowé; Tom Lenaerts; Inas Bosch (Zenodo, 2024)

Collective Intelligence in Decision-Making with Non-Stationary Experts. - Axel Abels; Vito Trianni; Ann Nowé; Tom Lenaerts (J. Artif. Intell. Res., 2025)

FRAUD-RLA: A new reinforcement learning adversarial attack against credit card fraud detection. - Daniele Lunghi; Yannick Molinghen; Alkis Simitsis; Tom Lenaerts; Gianluca Bontempi (CoRR, 2025)

Wisdom from Diversity: Bias Mitigation Through Hybrid Human-LLM Crowds. - Axel Abels; Tom Lenaerts (CoRR, 2025)

Open and Sustainable AI: challenges, opportunities and the road ahead in the life sciences. - Gavin Farrell; Eleni Adamidi; Rafael Andrade Buono; Mihail Anton; Omar Abdelghani Attafi; Salvador Capella-Gutiérrez; Emidio Capriotti; Leyla Jael Castro; Davide Cirillo; Lisa C. Crossman; Christophe Dessimoz; Alexandros C. Dimopoulos; et al. (CoRR, 2025)

Artificial Delegates Resolve Fairness Issues in Perpetual Voting with Partial Turnout. - Apurva Shah; Axel Abels; Ann Nowé; Tom Lenaerts (CoRR, 2025)

Zero-Incentive Dynamics: a look at reward sparsity through the lens of unrewarded subgoals. - Yannick Molinghen; Tom Lenaerts (CoRR, 2025)