Statistical analysis of domains in interacting protein pairs. - Tom M. W. Nye; Carlo Berzuini; Walter R. Gilks; M. Madan Babu; Sarah A. Teichmann (Bioinform., 2005)

A novel algorithm and web-based tool for comparing two alternative phylogenetic trees. - Tom M. W. Nye; Pietro Liò; Walter R. Gilks (Bioinform., 2006)

A Covariance Matrix Inversion Problem arising from the Construction of Phylogenetic Trees. - Tom M. W. Nye; Brad J. C. Baxter; Walter R. Gilks (LMS J. Comput. Math., 2007)

Diffusion on Some Simple Stratified Spaces. - Tom M. W. Nye; M. C. White (J. Math. Imaging Vis., 2014)

An Algorithm for Constructing Principal Geodesics in Phylogenetic Treespace. - Tom M. W. Nye (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)

Information geometry for phylogenetic trees. - Maryam K. Garba; Tom M. W. Nye; Jonas Lueg; Stephan F. Huckemann (CoRR, 2020)

Information Metrics for Phylogenetic Trees via Distributions of Discrete and Continuous Characters. - Maryam K. Garba; Tom M. W. Nye; Jonas Lueg; Stephan F. Huckemann (GSI, 2021)

Wald Space for Phylogenetic Trees. - Jonas Lueg; Maryam K. Garba; Tom M. W. Nye; Stephan F. Huckemann (GSI, 2021)

Types of Stickiness in BHV Phylogenetic Tree Spaces and Their Degree. - Lars Lammers; Do Tran Van; Tom M. W. Nye; Stephan F. Huckemann (GSI (1), 2023)

A sparse Bayesian hierarchical vector autoregressive model for microbial dynamics in a wastewater treatment plant. - Naomi E. Hannaford; Sarah E. Heaps; Tom M. W. Nye; Thomas P. Curtis; Ben Allen; Andrew Golightly; Darren J. Wilkinson (Comput. Stat. Data Anal., 2023)

Manifold-valued models for analysis of EEG time series data. - Tao Ding; Tom M. W. Nye; Yujiang Wang 002 (Comput. Stat. Data Anal., 2025)