% csauthors.net - beta - BibTeX bibliography of Tom Michoel
@article{journals/bmcbi/MichoelMBJSBLRKMP07,
title = {Validating module network learning algorithms using simulated data.},
year = {2007},
journal = {BMC Bioinform.},
author = {{Tom Michoel} and {Steven Maere} and {Eric Bonnet} and {Anagha Joshi} and {Yvan Saeys} and {Tim Van den Bulcke} and {Koenraad Van Leemput} and {Piet van Remortel} and {Martin Kuiper} and {Kathleen Marchal} and {Yves Van de Peer}}
}
@article{journals/bioinformatics/JoshiPM08,
title = {Analysis of a Gibbs sampler method for model-based clustering of gene expression data.},
year = {2008},
journal = {Bioinform.},
author = {{Anagha Joshi} and {Yves Van de Peer} and {Tom Michoel}}
}
@article{journals/bioinformatics/JoshiSMPM09,
title = {Module networks revisited: computational assessment and prioritization of model predictions.},
year = {2009},
journal = {Bioinform.},
author = {{Anagha Joshi} and {Riet De Smet} and {Kathleen Marchal} and {Yves Van de Peer} and {Tom Michoel}}
}
@article{journals/bmcsb/MichoelSJPM09,
title = {Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks.},
year = {2009},
journal = {BMC Syst. Biol.},
author = {{Tom Michoel} and {Riet De Smet} and {Anagha Joshi} and {Yves Van de Peer} and {Kathleen Marchal}}
}
@inproceedings{conf/cibcb/QiMB10,
title = {A regression tree-based Gibbs sampler to learn the regulation programs in a transcription regulatory module network.},
year = {2010},
booktitle = {CIBCB},
author = {{Jianlong Qi} and {Tom Michoel} and {Gregory Butler}},
publisher = {IEEE},
booktitle = {Proceedings of the 2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2010, Montreal, QC, Canada, May 2-5, 2010}
}
@article{journals/bioinformatics/BonnetMP10,
title = {Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data.},
year = {2010},
journal = {Bioinform.},
author = {{Eric Bonnet} and {Tom Michoel} and {Yves Van de Peer}}
}
@inproceedings{conf/bcb/QiMB11,
title = {An integrative approach to infer regulation programs in a transcription regulatory module network.},
year = {2011},
booktitle = {BCB},
author = {{Jianlong Qi} and {Tom Michoel} and {Gregory Butler}},
publisher = {ACM},
booktitle = {ACM International Conference on Bioinformatics, Computational Biology and Biomedicine, BCB' 11, Chicago, IL, USA - July 31 - August 03, 2011}
}
@inproceedings{conf/evoW/QiMB11,
title = {Applying Linear Models to Learn Regulation Programs in a Transcription Regulatory Module Network.},
year = {2011},
booktitle = {EvoBio},
author = {{Jianlong Qi} and {Tom Michoel} and {Gregory Butler}},
publisher = {Springer},
booktitle = {Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics - 9th European Conference, EvoBIO 2011, Torino, Italy, April 27-29, 2011. Proceedings}
}
@article{journals/bioinformatics/AudenaertPBPDPM11,
title = {CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks.},
year = {2011},
journal = {Bioinform.},
author = {{Pieter Audenaert} and {Thomas Van Parys} and {Florian Brondel} and {Mario Pickavet} and {Piet Demeester} and {Yves Van de Peer} and {Tom Michoel}}
}
@article{journals/bioinformatics/ClaeysSSMM12,
title = {MotifSuite: workflow for probabilistic motif detection and assessment.},
year = {2012},
journal = {Bioinform.},
author = {{Marleen Claeys} and {Valerie Storms} and {Hong Sun} and {Tom Michoel} and {Kathleen Marchal}}
}
@article{journals/bioinformatics/QiM12,
title = {Context-specific transcriptional regulatory network inference from global gene expression maps using double two-way t-tests.},
year = {2012},
journal = {Bioinform.},
author = {{Jianlong Qi} and {Tom Michoel}}
}
@article{journals/corr/abs-1205-3630,
title = {Alignment and integration of complex networks by hypergraph-based spectral clustering},
year = {2012},
journal = {CoRR},
author = {{Tom Michoel} and {Bruno Nachtergaele}}
}
@article{journals/bmcbi/QiABM14,
title = {kruX: matrix-based non-parametric eQTL discovery.},
year = {2014},
journal = {BMC Bioinform.},
author = {{Jianlong Qi} and {Hassan Asl} and {Johan Björkegren} and {Tom Michoel}}
}
@article{journals/jcb/JoshiBM15,
title = {Multi-Species Network Inference Improves Gene Regulatory Network Reconstruction for Early Embryonic Development in Drosophila.},
year = {2015},
journal = {J. Comput. Biol.},
author = {{Anagha Joshi} and {Yvonne Beck} and {Tom Michoel}}
}
@article{journals/ploscb/BonnetCM15,
title = {Integrative Multi-omics Module Network Inference with Lemon-Tree.},
year = {2015},
journal = {PLoS Comput. Biol.},
author = {{Eric Bonnet} and {Laurence Calzone} and {Tom Michoel}}
}
@article{journals/csda/Michoel16,
title = {Natural coordinate descent algorithm for L1-penalised regression in generalised linear models.},
year = {2016},
journal = {Comput. Stat. Data Anal.},
author = {{Tom Michoel}}
}
@article{journals/ploscb/WangM17,
title = {Efficient and accurate causal inference with hidden confounders from genome-transcriptome variation data.},
year = {2017},
journal = {PLoS Comput. Biol.},
author = {{Lingfei Wang} and {Tom Michoel}}
}
@inproceedings{conf/nips/Michoel18,
title = {Analytic solution and stationary phase approximation for the Bayesian lasso and elastic net.},
year = {2018},
booktitle = {NeurIPS},
author = {{Tom Michoel}},
booktitle = {Advances in Neural Information Processing Systems 31: Annual Conference on Neural Information Processing Systems 2018, NeurIPS 2018, December 3-8, 2018, Montréal, Canada.}
}
@article{journals/bioinformatics/ErolaBM20,
title = {Model-based clustering of multi-tissue gene expression data.},
year = {2020},
journal = {Bioinform.},
author = {{Pau Erola} and {Johan Björkegren} and {Tom Michoel}}
}
@article{journals/corr/abs-2005-02921,
title = {Restricted maximum-likelihood method for learning latent variance components in gene expression data with known and unknown confounders.},
year = {2020},
journal = {CoRR},
author = {{Muhammad Ammar Malik} and {Tom Michoel}}
}
@article{journals/corr/abs-2005-03961,
title = {Predicting gene expression from network topology using graph neural networks.},
year = {2020},
journal = {CoRR},
author = {{Ramin Hasibi} and {Tom Michoel}}
}
@inproceedings{conf/cibb/MalikLM21,
title = {High-Dimensional Multi-trait GWAS By Reverse Prediction of Genotypes Using Machine Learning Methods.},
year = {2021},
booktitle = {CIBB},
author = {{Muhammad Ammar Malik} and {Adriaan-Alexander Ludl} and {Tom Michoel}},
publisher = {Springer},
booktitle = {Computational Intelligence Methods for Bioinformatics and Biostatistics - 17th International Meeting, CIBB 2021, Virtual Event, November 15-17, 2021, Revised Selected Papers}
}
@article{journals/bmcbi/HasibiM21,
title = {A Graph Feature Auto-Encoder for the prediction of unobserved node features on biological networks.},
year = {2021},
journal = {BMC Bioinform.},
author = {{Ramin Hasibi} and {Tom Michoel}}
}
@article{journals/corr/abs-2109-06448,
title = {Tesla-Rapture: A Lightweight Gesture Recognition System from mmWave Radar Point Clouds.},
year = {2021},
journal = {CoRR},
author = {{Dariush Salami} and {Ramin Hasibi} and {Sameera Palipana} and {Petar Popovski} and {Tom Michoel} and {Stephan Sigg}}
}
@article{journals/corr/abs-2109-07253,
title = {Integrating Sensing and Communication in Cellular Networks via NR Sidelink.},
year = {2021},
journal = {CoRR},
author = {{Dariush Salami} and {Ramin Hasibi} and {Stefano Savazzi} and {Tom Michoel} and {Stephan Sigg}}
}
@article{journals/corr/abs-2111-00108,
title = {High-dimensional multi-trait GWAS by reverse prediction of genotypes.},
year = {2021},
journal = {CoRR},
author = {{Muhammad Ammar Malik} and {Adriaan-Alexander Ludl} and {Tom Michoel}}
}
@article{journals/corr/abs-2204-00067,
title = {rfPhen2Gen: A machine learning based association study of brain imaging phenotypes to genotypes.},
year = {2022},
journal = {CoRR},
author = {{Muhammad Ammar Malik} and {Alexander Selvikvåg Lundervold} and {Tom Michoel}}
}
@article{journals/corr/abs-2209-14664,
title = {Causal inference in drug discovery and development.},
year = {2022},
journal = {CoRR},
author = {{Tom Michoel} and {Jitao David Zhang}}
}
@article{journals/tmc/SalamiHPPMS23,
title = {Tesla-Rapture: A Lightweight Gesture Recognition System From mmWave Radar Sparse Point Clouds.},
year = {2023},
month = {August},
journal = {IEEE Trans. Mob. Comput.},
author = {{Dariush Salami} and {Ramin Hasibi} and {Sameera Palipana} and {Petar Popovski} and {Tom Michoel} and {Stephan Sigg}}
}