MIDAS: software for analysis and visualisation of interallelic disequilibrium between multiallelic markers. - Tom R. Gaunt; Santiago Rodríguez; Carlos Zapata; Ian N. M. Day (BMC Bioinform., 2006)

Cubic exact solutions for the estimation of pairwise haplotype frequencies: implications for linkage disequilibrium analyses and a web tool 'CubeX'. - Tom R. Gaunt; Santiago Rodríguez; Ian N. M. Day (BMC Bioinform., 2007)

Texture Classification Using Kernel-Based Techniques. - Carlos Fernandez-Lozano; José A. Seoane; Marcos Gestal; Tom R. Gaunt; Colin Campbell (IWANN (1), 2013)

Predicting the functional consequences of cancer-associated amino acid substitutions. - Hashem A. Shihab; Julian Gough; David N. Cooper; Ian N. M. Day; Tom R. Gaunt (Bioinform., 2013)

A Random Forest proximity matrix as a new measure for gene annotation. - José A. Seoane; Ian N. M. Day; Juan P. Casas; Colin Campbell; Tom R. Gaunt (ESANN, 2014)

Using a Random Forest proximity measure for variable importance stratification in genotypic data. - José A. Seoane; Ian N. M. Day; Colin Campbell; Juan P. Casas; Tom R. Gaunt (IWBBIO, 2014)

A pathway-based data integration framework for prediction of disease progression. - José A. Seoane; Ian N. M. Day; Tom R. Gaunt; Colin Campbell (Bioinform., 2014)

Canonical Correlation Analysis for Gene-Based Pleiotropy Discovery. - José A. Seoane; Colin Campbell; Ian N. M. Day; Juan P. Casas; Tom R. Gaunt (PLoS Comput. Biol., 2014)

Sequential data selection for predicting the pathogenic effects of sequence variation. - Mark F. Rogers; Colin Campbell; Hashem A. Shihab; Tom R. Gaunt; Matthew E. Mort; David N. Cooper (BIBM, 2015)

An integrative approach to predicting the functional effects of non-coding and coding sequence variation. - Hashem A. Shihab; Mark F. Rogers; Julian Gough; Matthew E. Mort; David N. Cooper; Ian N. M. Day; Tom R. Gaunt; Colin Campbell (Bioinform., 2015)

Texture classification using feature selection and kernel-based techniques. - Carlos Fernandez-Lozano; José Antonio Seoane Fernández; Marcos Gestal; Tom R. Gaunt; Julián Dorado; Colin Campbell (Soft Comput., 2015)

Discovery and replication of SNP-SNP interactions for quantitative lipid traits in over 60,000 individuals. - Emily Rose Holzinger; Shefali S. Verma; Carrie Colleen Buchanan Moore; Molly A. Hall; Rishika De; Diane Gilbert-Diamond; Matthew B. Lanktree; Nathan Pankratz; Antoinette Amuzu; Amber Burt; Caroline Dale; Scott M. Dudek; et al. (BioData Min., 2017)

HIPred: an integrative approach to predicting haploinsufficient genes. - Hashem A. Shihab; Mark F. Rogers; Colin Campbell; Tom R. Gaunt (Bioinform., 2017)

LD Hub: a centralized database and web interface to perform LD score regression that maximizes the potential of summary level GWAS data for SNP heritability and genetic correlation analysis. - Jie Zheng 006; Mesut A. Erzurumluoglu; Benjamin L. Elsworth; John P. Kemp; Laurence J. Howe; Philip C. Haycock; Gibran Hemani; Katherine Tansey; Charles Laurin; Early Genetics; Lifecourse Epidemiology (EAGLE) Eczema Consortium; Beate St. Pourcain; et al. (Bioinform., 2017)

HAPRAP: a haplotype-based iterative method for statistical fine mapping using GWAS summary statistics. - Jie Zheng 006; Santiago Rodríguez; Charles Laurin; Denis Baird; Lea Trela-Larsen; Mesut A. Erzurumluoglu; Yi Zheng; Jon White; Claudia Giambartolomei; Delilah Zabaneh; Richard Morris; Meena Kumari; et al. (Bioinform., 2017)

An integrative approach to predicting the functional effects of small indels in non-coding regions of the human genome. - Michael Ferlaino; Mark F. Rogers; Hashem A. Shihab; Matthew E. Mort; David N. Cooper; Tom R. Gaunt; Colin Campbell (BMC Bioinform., 2017)

GTB - an online genome tolerance browser. - Hashem A. Shihab; Mark F. Rogers; Michael Ferlaino; Colin Campbell; Tom R. Gaunt (BMC Bioinform., 2017)

FATHMM-XF: accurate prediction of pathogenic point mutations via extended features. - Mark F. Rogers; Hashem A. Shihab; Matthew E. Mort; David N. Cooper; Tom R. Gaunt; Colin Campbell (Bioinform., 2018)

CScape-somatic: distinguishing driver and passenger point mutations in the cancer genome. - Mark F. Rogers; Tom R. Gaunt; Colin Campbell (Bioinform., 2020)

Prediction of driver variants in the cancer genome via machine learning methodologies. - Mark F. Rogers; Tom R. Gaunt; Colin Campbell (Briefings Bioinform., 2021)

MELODI Presto: a fast and agile tool to explore semantic triples derived from biomedical literature. - Benjamin L. Elsworth; Tom R. Gaunt (Bioinform., 2021)

Erratum to: EpiGraphDB: a database and data mining platform for health data science. - Yi Liu 058; Benjamin L. Elsworth; Pau Erola; Valeriia Haberland; Gibran Hemani; Matt Lyon; Jie Zheng 006; Oliver Lloyd; Marina Vabistsevits; Tom R. Gaunt (Bioinform., 2021)

EpiGraphDB: a database and data mining platform for health data science. - Yi Liu 058; Benjamin L. Elsworth; Pau Erola; Valeriia Haberland; Gibran Hemani; Matt Lyon; Jie Zheng 006; Oliver Lloyd; Marina Vabistsevits; Tom R. Gaunt (Bioinform., 2021)

MendelVar: gene prioritization at GWAS loci using phenotypic enrichment of Mendelian disease genes. - M. K. Sobczyk; Tom R. Gaunt; Lavinia Paternoster (Bioinform., 2021)

An informatics consult approach for generating clinical evidence for treatment decisions. - Alvina Grace Lai; Wai Hoong Chang; Constantinos A. Parisinos; Michail Katsoulis; Ruth M. Blackburn; Anoop D. Shah; Vincent Nguyen; Spiros C. Denaxas; George Davey Smith; Tom R. Gaunt; Krishnarajah Nirantharakumar; Murray P. Cox; et al. (BMC Medical Informatics Decis. Mak., 2021)

Using language models and ontology topology to perform semantic mapping of traits between biomedical datasets. - Yi Liu 058; Benjamin L. Elsworth; Tom R. Gaunt (Bioinform., 2023)

Assessing the effects of hyperparameters on knowledge graph embedding quality. - Oliver Lloyd; Yi Liu 058; Tom R. Gaunt (J. Big Data, 2023)

Tensor Factorisation for Polypharmacy Side Effect Prediction. - Oliver Lloyd; Yi Liu 058; Tom R. Gaunt (CoRR, 2024)

Integrating Mendelian randomization and literature-mined evidence for breast cancer risk factors. - Marina Vabistsevits; Timothy Robinson; Ben Elsworth; Yi Liu 058; Tom R. Gaunt (J. Biomed. Informatics, 2025)