Improved prediction of transcription binding sites from chromatin modification data. - Kengo Sato; Tom Whitington; Timothy L. Bailey; Paul Horton (CIBCB, 2010)

The value of position-specific priors in motif discovery using MEME. - Timothy L. Bailey; Mikael Bodén; Tom Whitington; Philip Machanick (BMC Bioinform., 2010)

Epigenetic priors for identifying active transcription factor binding sites. - Gabriel Cuéllar-Partida; Fabian A. Buske; Robert C. McLeay; Tom Whitington; William Stafford Noble; Timothy L. Bailey (Bioinform., 2012)