Genetic and Random Search Methods in Optimal Shape Design Problems. - Jaroslav Haslinger; D. Jedelský; Tomás Kozubek; Josef Tvrdík (J. Glob. Optim., 2000)

Shape Optimization and Fictitious Domain Approach for Solving Free Boundary Problems of Bernoulli Type. - Jaroslav Haslinger; Tomás Kozubek; Karl Kunisch; Gunther H. Peichl (Comput. Optim. Appl., 2003)

An Adaptive WEM Algorithm for Solving Elliptic Boundary Value Problems in Fairly General Domains. - Stefano Berrone; Tomás Kozubek (SIAM J. Sci. Comput., 2006)

Projected Schur complement method for solving non-symmetric systems arising from a smooth fictitious domain approach. - Jaroslav Haslinger; Tomás Kozubek; Radek Kucera; Gunther H. Peichl (Numer. Linear Algebra Appl., 2007)

A fictitious domain approach to the numerical solution of PDEs in stochastic domains. - Claudio Canuto; Tomás Kozubek (Numerische Mathematik, 2007)

A Description of a Highly Modular System for the Emergent Flood Prediction. - Ivo Vondrák; Jan Martinovic; Jan Kozuszník; Svatopluk Stolfa; Tomás Kozubek; Petr Kubícek; Vít Vondrák; Jan Unucka (CISIM, 2008)

A Scalable TFETI Based Algorithm for 2D and 3D Frictionless Contact Problems. - Zdenek Dostál; Tomás Brzobohatý; Tomás Kozubek; Alexandros Markopoulos; Vít Vondrák (LSSC, 2009)

Fictitious domain formulations of unilateral problems: analysis and algorithms. - Jaroslav Haslinger; Tomás Kozubek; Radek Kucera (Computing, 2009)

A scalable TFETI algorithm for two-dimensional multibody contact problems with friction. - Zdenek Dostál; Tomás Kozubek; P. Horyl; Tomás Brzobohatý; Alexandros Markopoulos (J. Comput. Appl. Math., 2010)

Cholesky decomposition of a positive semidefinite matrix with known kernel. - Zdenek Dostál; Tomás Kozubek; Alexandros Markopoulos; Martin Mensík (Appl. Math. Comput., 2011)

An optimal algorithm and superrelaxation for minimization of a quadratic function subject to separable convex constraints with applications. - Zdenek Dostál; Tomás Kozubek (Math. Program., 2012)

On the Moore-Penrose inverse in solving saddle-point systems with singular diagonal blocks. - Radek Kucera; Tomás Kozubek; Alexandros Markopoulos; Jitka Machalová (Numer. Linear Algebra Appl., 2012)

Total FETI domain decomposition method and its massively parallel implementation. - Tomás Kozubek; Vít Vondrák; Martin Mensík; David Horák; Zdenek Dostál; Vaclav Hapla; Pavla Kabelíková; Martin Cermák (Adv. Eng. Softw., 2013)

Scalable Domain Decomposition Algorithms for Contact Problems: Theory, Numerical Experiments, and Real World Problems. - Zdenek Dostál; Tomás Kozubek; Tomás Brzobohatý; Alexandros Markopoulos; Marie Sadowská; Vít Vondrák (Domain Decomposition Methods in Science and Engineering XX, 2013)

TFETI Scalable Solvers for Transient Contact Problems. - Tomás Kozubek; Zdenek Dostál; Tomás Brzobohatý; Alexandros Markopoulos; Oldrich Vlach (Domain Decomposition Methods in Science and Engineering XX, 2013)

A Comparison of TFETI and TBETI for Numerical Solution of Engineering Problems of Contact Mechanics. - Dalibor Lukás; Marie Sadowská; Tomás Kozubek; Alexandros Markopoulos; Tomás Brzobohatý (Domain Decomposition Methods in Science and Engineering XX, 2013)

On the solution of convex QPQC problems with elliptic and other separable constraints with strong curvature. - Jirí Bouchala; Zdenek Dostál; Tomás Kozubek; Lukás Pospísil; Petr Vodstrcil (Appl. Math. Comput., 2014)

A TFETI domain decomposition solver for elastoplastic problems. - Martin Cermák; Tomás Kozubek; Stanislav Sysala; Jan Valdman (Appl. Math. Comput., 2014)

On R-linear convergence of semi-monotonic inexact augmented Lagrangians for bound and equality constrained quadratic programming problems with application. - Zdenek Dostál; Tomás Brzobohatý; David Horák; Tomás Kozubek; Petr Vodstrcil (Comput. Math. Appl., 2014)

Acceleration of Blender Cycles Path-Tracing Engine Using Intel Many Integrated Core Architecture. - Milan Jaros; Lubomír Ríha; Petr Strakos; Tomás Karásek; Alena Vasatová; Marta Jarosová; Tomás Kozubek (CISIM, 2015)

Efficient Implementation of Total FETI Solver for Graphic Processing Units Using Schur Complement. - Lubomír Ríha; Tomás Brzobohatý; Alexandros Markopoulos; Tomás Kozubek; Ondrej Meca; Olaf Schenk; Wim Vanroose (HPCSE, 2015)

Parallel Implementation of Collaborative Filtering Technique for Denoising of CT Images. - Petr Strakos; Milan Jaros; Tomás Karásek; Tomás Kozubek (HPCSE, 2015)

On Conditioning of Constraints Arising from Variationally Consistent Discretization of Contact Problems and Duality Based Solvers. - Oldrich Vlach; Zdenek Dostál; Tomás Kozubek (Comput. Methods Appl. Math., 2015)

Reorthogonalization-based stiffness preconditioning in FETI algorithms with applications to variational inequalities. - Zdenek Dostál; Tomás Kozubek; Oldrich Vlach; Tomás Brzobohatý (Numer. Linear Algebra Appl., 2015)

Massively Parallel Hybrid Total FETI (HTFETI) Solver. - Lubomír Ríha; Tomás Brzobohatý; Alexandros Markopoulos; Ondrej Meca; Tomás Kozubek (PASC, 2016)

Implementation of the efficient communication layer for the highly parallel total FETI and hybrid total FETI solvers. - Lubomír Ríha; Tomás Brzobohatý; Alexandros Markopoulos; Marta Jarosová; Tomás Kozubek; David Horák; Vaclav Hapla (Parallel Comput., 2016)

Using ESPRESO as Linear Solver Library for Third Party FEM Tools for Solving Large Scale Problems. - Ondrej Meca; Lubomír Ríha; Alexandros Markopoulos; Tomás Brzobohatý; Tomás Kozubek (HPCSE, 2017)

Civil-Comp: Parallel, Distributed and Cloud Computing. - Peter Iványi; Jaroslav Kruis; Tomás Kozubek; Wolfgang Gentzsch; Barry H. V. Topping (Adv. Eng. Softw., 2017)

Implementation of K-means segmentation algorithm on Intel Xeon Phi and GPU: Application in medical imaging. - Milan Jaros; Petr Strakos; Tomás Karásek; Lubomír Ríha; Alena Vasatová; Marta Jarosová; Tomás Kozubek (Adv. Eng. Softw., 2017)

Intel Xeon Phi acceleration of Hybrid Total FETI solver. - Michal Merta; Lubomir Riha; Ondrej Meca; Alexandros Markopoulos; Tomás Brzobohatý; Tomás Kozubek; Vít Vondrák (Adv. Eng. Softw., 2017)

Editorial. - Radim Blaheta; Jirí Starý; Zdenek Dostál; Tomás Kozubek (Math. Comput. Simul., 2018)

A massively parallel and memory-efficient FEM toolbox with a hybrid total FETI solver with accelerator support. - Lubomir Riha; Michal Merta; Radim Vavrík; Tomás Brzobohatý; Alexandros Markopoulos; Ondrej Meca; Ondrej Vysocky; Tomás Kozubek; Vít Vondrák (Int. J. High Perform. Comput. Appl., 2019)

Selection of Appropriate Symbolic Regression Models Using Statistical and Dynamic System Criteria: Example of Waste Gasification. - Pavel Praks; Marek Lampart; Renáta Praksová; Dejan Brkic; Tomás Kozubek; Jan Najser (Axioms, 2022)

Speed Up of Volumetric Non-Local Transform-Domain Filter Utilising HPC Architecture. - Petr Strakos; Milan Jaros; Lubomir Riha; Tomás Kozubek (J. Imaging, 2023)

Multi-GPU Accelerated Rendering of Massive Scenes with Out-of-Core Support for CPU Memory. - Milan Jaros; Lubomir Riha; Petr Strakos; Tomás Kozubek (PPAM (1), 2024)

Automated search of an optimal configuration of FETI-based algorithms with the swarm and evolutionary algorithms. - Tomás Panoc; Ondrej Meca; Lukas Tomaszek; Tomás Brzobohatý; Lubomír Ríha; Ivan Zelinka; Tomás Kozubek (Appl. Soft Comput., 2024)

Symbolic Regression Approaches for the Direct Calculation of Pipe Diameter. - Dejan Brkic; Pavel Praks; Renáta Praksová; Tomás Kozubek (Axioms, 2024)

The European master for HPC curriculum. - Pascal Bouvry; Mats Brorsson; Ramon Canal; Aryan Eftekhari; Siegfried Höfinger; Didier Smets; Harald Köstler; Tomás Kozubek; Ezhilmathi Krishnasamy; Josep Llosa; Alexandra Lukas-Rother; Xavier Martorell; et al. (J. Parallel Distributed Comput., 2025)