An Evolvable Image Filter: Experimental Evaluation of a Complete Hardware Implementation in FPGA. - Tomás Martínek; Lukás Sekanina (ICES, 2005)

Extrinsic and Intrinsic Evolution of Multifunctional Combinational Modules. - Lukás Sekanina; Tomás Martínek; Zbysek Gajda (IEEE Congress on Evolutionary Computation, 2006)

A Flexible Technique for the Automatic Design of Approximate String Matching Architectures. - Tomás Martínek; Jan Korenek; Otto Fucík; Matej Lexa (DDECS, 2006)

Automatic Generation of Circuits for Approximate String Matching. - Tomás Martínek; Otto Fucík; Patrik Beck; Matej Lexa (DDECS, 2007)

Online Protocol Testing for FPGA Based Fault Tolerant Systems. - Jiri Tobola; Zdenek Kotásek; Jan Korenek; Tomás Martínek; Martin Straka (DSD, 2007)

High Level Abstraction Language as an Alternative to Embedded Processors for Internet Packet Processing in FPGA. - Tomas Dedek; Tomas Marek; Tomás Martínek (FPL, 2007)

NetCOPE: Platform for Rapid Development of Network Applications. - Tomás Martínek; Martin Kosek (DDECS, 2008)

GICS: Generic interconnection system. - Tamas Malek; Tomás Martínek; Jan Korenek (FPL, 2008)

Hardware acceleration of approximate palindromes searching. - Tomás Martínek; Matej Lexa (FPT, 2008)

Architecture model for approximate palindrome detection. - Tomás Martínek; Jan Vozenilek; Matej Lexa (DDECS, 2009)

Hardware Acceleration of Approximate Tandem Repeat Detection. - Tomás Martínek; Matej Lexa (FCCM, 2010)

Architecture model for approximate tandem repeat detection. - Tomás Martínek; Matej Lexa (ASAP, 2011)

A dynamic programming algorithm for identification of triplex-forming sequences. - Matej Lexa; Tomás Martínek; Ivana Burgetova; Daniel Kopecek; Marie Brázdová (Bioinform., 2011)

Triplex: an R/Bioconductor package for identification and visualization of potential intramolecular triplex patterns in DNA sequences. - Jirí Hon; Tomás Martínek; Kamil Rajdl; Matej Lexa (Bioinform., 2013)

Uneven Distribution of Potential Triplex Sequences in the Human Genome - In Silico Study using the R/Bioconductor Package Triplex. - Matej Lexa; Tomás Martínek; Marie Brázdová (BIOINFORMATICS, 2014)

On Identities in Modern Networks. - Libor Polcak; Radek Hranicky; Tomás Martínek (J. Digit. Forensics Secur. Law, 2014)

Scanning System for Ballistic Analysis. - Tomás Martínek; Josef Kudelka; Milan Navrátil; Vojtech Kresálek (CSOC (3), 2016)

pqsfinder: an exhaustive and imperfection-tolerant search tool for potential quadruplex-forming sequences in R. - Jirí Hon; Tomás Martínek; Jaroslav Zendulka; Matej Lexa (Bioinform., 2017)

FireProt: web server for automated design of thermostable proteins. - Milos Musil; Jan Stourac; Jaroslav Bendl; Jan Brezovsky; Zbynek Prokop; Jaroslav Zendulka; Tomás Martínek; David Bednar; Jirí Damborský (Nucleic Acids Res., 2017)

HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information. - Lenka Sumbalova; Jan Stourac; Tomás Martínek; David Bednar; Jirí Damborský (Nucleic Acids Res., 2018)

EnzymeMiner: automated mining of soluble enzymes with diverse structures, catalytic properties and stabilities. - Jirí Hon; Simeon Borko; Jan Stourac; Zbynek Prokop; Jaroslav Zendulka; David Bednar; Tomás Martínek; Jirí Damborský (Nucleic Acids Res., 2020)

SoluProt: prediction of soluble protein expression in Escherichia coli. - Jirí Hon; Martin Marusiak; Tomás Martínek; Antonin Kunka; Jaroslav Zendulka; David Bednar; Jirí Damborský (Bioinform., 2021)

digIS: towards detecting distant and putative novel insertion sequence elements in prokaryotic genomes. - Janka Puterová; Tomás Martínek (BMC Bioinform., 2021)

Evolutionary Optimized 3D WiFi Antennas Manufactured via Laser Powder Bed Fusion. - Dominik Mair; Michael Renzler; Stanislav Kovar; Tomás Martínek; Tomas Kadavy; Simon Bergmueller; Andrada Horn; Jakob Braun; Lukas Kaserer (IEEE Access, 2023)

LGBM2VHDL: Mapping of LightGBM Models to FPGA. - Tomás Martínek; Jan Korenek; Tomás Cejka (FCCM, 2024)

Developing and Benchmarking Sulfate and Sulfamate Force Field Parameters via Ab Initio Molecular Dynamics Simulations To Accurately Model Glycosaminoglycan Electrostatic Interactions. - Miguel Riopedre-Fernandez; Vojtech Kostal; Tomás Martínek; Hector Martinez-Seara; Denys Biriukov (J. Chem. Inf. Model., 2024)