Finite difference scheme for the Willmore flow of graphs. - Tomás Oberhuber (Kybernetika, 2007)

New Row-grouped CSR format for storing the sparse matrices on GPU with implementation in CUDA - Tomás Oberhuber; Atsushi Suzuki; Jan Vacata (CoRR, 2010)

The CUDA implementation of the method of lines for the curvature dependent flows. - Tomás Oberhuber; Atsushi Suzuki; Vítezslav Zabka (Kybernetika, 2011)

Towards a Formalism of Configuration Properties Propagation. - David Fabian; Radek Marík; Tomás Oberhuber (Configuration Workshop, 2012)

Adaptive Row-grouped CSR Format for Storing of Sparse Matrices on GPU - Martin Heller; Tomás Oberhuber (CoRR, 2012)

Implementation of the Vanka-type multigrid solver for the finite element approximation of the Navier-Stokes equations on GPU. - Petr Bauer; Vladimír Klement; Tomás Oberhuber; Vítezslav Zabka (Comput. Phys. Commun., 2016)

Efficient Parallel Generation of Many-Nucleon Basis for Large-Scale Ab Initio Nuclear Structure Calculations. - Daniel Langr; Tomás Dytrych; Tomás Oberhuber; Frantisek Knapp (PPAM (2), 2017)

On optimal node spacing for immersed boundary-lattice Boltzmann method in 2D and 3D. - Radek Fucík; Pavel Eichler; Robert Straka; Petr Paus; Jakub Klinkovský; Tomás Oberhuber (Comput. Math. Appl., 2019)

Multidimensional mixed-hybrid finite element method for compositional two-phase flow in heterogeneous porous media and its parallel implementation on GPU. - Radek Fucík; Jakub Klinkovský; Jakub Solovský; Tomás Oberhuber; Jirí Mikyska (Comput. Phys. Commun., 2019)

Sum-Product-Transform Networks: Exploiting Symmetries using Invertible Transformations. - Tomás Pevný; Václav Smídl; Martin Trapp; Ondrej Polácek; Tomás Oberhuber (PGM, 2020)

Configurable Open-source Data Structure for Distributed Conforming Unstructured Homogeneous Meshes with GPU Support. - Jakub Klinkovský; Tomás Oberhuber; Radek Fucík; Vítezslav Zabka (ACM Trans. Math. Softw., 2022)

Acceleration of a parallel BDDC solver by using graphics processing units on subdomains. - Jakub Sístek; Tomás Oberhuber (Int. J. High Perform. Comput. Appl., 2023)

Non-Newtonian turbulent flow through aortic phantom: Experimental and computational study using magnetic resonance imaging and lattice Boltzmann method. - Pavel Eichler; Radek Galabov; Radek Fucík; Katerina Skardová; Tomás Oberhuber; Petr Paus; Jaroslav Tintera; Radomír Chabiniok (Comput. Math. Appl., 2023)

Lattice Boltzmann Method Analysis Tool (LBMAT). - Radek Fucík; Pavel Eichler; Jakub Klinkovský; Robert Straka; Tomás Oberhuber (Numer. Algorithms, 2023)

Numerical optimization of the Dirichlet boundary condition in the phase field model with an application to pure substance solidification. - Ales Wodecki; Pavel Strachota; Tomás Oberhuber; Katerina Skardová; Monika Balázsová; Michal Bohatý (Comput. Math. Appl., 2023)

Quantification of Perfusion Using Fermi Deconvolution. - Iuliia Shestopalova; Jan Kovár; Tomás Oberhuber (FIMH (1), 2025)