ProfNet, a method to derive profile-profile alignment scoring functions that improves the alignments of distantly related proteins. - Tomas Ohlson; Arne Elofsson (BMC Bioinform., 2005)

Improved alignment quality by combining evolutionary information, predicted secondary structure and self-organizing maps. - Tomas Ohlson; Varun Aggarwal; Arne Elofsson; Robert M. MacCallum (BMC Bioinform., 2006)

The use of evolutionary information in protein alignments and homology identification. - Tomas Ohlson (2006)