Gene expression model (in)validation by Fourier analysis. - Tomasz Konopka; Marianne Rooman (BMC Syst. Biol., 2010)

Automated analysis of biological oscillator models using mode decomposition. - Tomasz Konopka (Bioinform., 2011)

Comparison of genetic variants in matched samples using thesaurus annotation. - Tomasz Konopka; Sebastian M. B. Nijman (Bioinform., 2016)

Incremental data integration for tracking genotype-disease associations. - Tomasz Konopka; Damian Smedley (PLoS Comput. Biol., 2020)

Diffusion enables integration of heterogeneous data and user-driven learning in a desktop knowledge-base. - Tomasz Konopka; Sandra Ng; Damian Smedley (PLoS Comput. Biol., 2021)