GRID Formalism for the Comparative Molecular Surface Analysis: Application to the CoMFA Benchmark Steroids, Azo Dyes, and HEPT Derivatives. - Jaroslaw Polanski; Rafal Gieleciak; Tomasz Magdziarz; Andrzej Bak (J. Chem. Inf. Model., 2004)

Modeling Robust QSAR. 1. Coding Molecules in 3D-QSAR - from a Point to Surface Sectors and Molecular Volumes. - Rafal Gieleciak; Tomasz Magdziarz; Andrzej Bak; Jaroslaw Polanski (J. Chem. Inf. Model., 2005)

Modeling Robust QSAR. - Jaroslaw Polanski; Andrzej Bak; Rafal Gieleciak; Tomasz Magdziarz (J. Chem. Inf. Model., 2006)

New Publicly Available Chemical Query Language, CSRML, To Support Chemotype Representations for Application to Data Mining and Modeling. - Chihae Yang; Aleksey Tarkhov; Jörg Marusczyk; Bruno Bienfait; Johann Gasteiger; Thomas Kleinöder; Tomasz Magdziarz; Oliver Sacher; Christof H. Schwab; Johannes Schwöbel; Lothar Terfloth; Kirk Arvidson; et al. (J. Chem. Inf. Model., 2015)

AQUA-DUCT: a ligands tracking tool. - Tomasz Magdziarz; Karolina Mitusinska; Sandra Goldowska; Alicja Pluciennik; Michal Stolarczyk; Magdalena Lugowska; Artur Góra (Bioinform., 2017)

BALCONY: an R package for MSA and functional compartments of protein variability analysis. - Alicja Pluciennik; Michal Stolarczyk; Maria Bzówka; Agata Raczynska; Tomasz Magdziarz; Artur Góra (BMC Bioinform., 2018)

AQUA-DUCT 1.0: structural and functional analysis of macromolecules from an intramolecular voids perspective. - Tomasz Magdziarz; Karolina Mitusinska; Maria Bzówka; Agata Raczynska; Agnieszka Stanczak; Michal Banas; Weronika Bagrowska; Artur Góra (Bioinform., 2020)

Geometry-Based versus Small-Molecule Tracking Method for Tunnel Identification: Benefits and Pitfalls. - Karolina Mitusinska; Maria Bzówka; Tomasz Magdziarz; Artur Góra (J. Chem. Inf. Model., 2022)

Evolution of tunnels in α/β-hydrolase fold proteins - What can we learn from studying epoxide hydrolases? - Maria Bzówka; Karolina Mitusinska; Agata Raczynska; Tomasz Skalski; Aleksandra Samol; Weronika Bagrowska; Tomasz Magdziarz; Artur Góra (PLoS Comput. Biol., 2022)